fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp028444 DSWRTSLDLNLSAMVP in 143/323 AT1G28360.1 1st_1st 0.367412140 Ib
NFPFLLDLNSPPCLDEE in 304/323
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28360.1     ------MASTTCARE---VHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAY
pp028444_Pp1s12 MAARDEKASTKSSQAYQGVHFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDTAEEAARAY
                       ***..::    **:**********:********************.**** **

AT1G28360.1     DGAARFLRGIKAKTNFPSPLSLD---LNHLPSAPSAAT-AAANN--QP-HQHQQLWFAAP
pp028444_Pp1s12 DSAARALRGSKAKTNFACPPSSDDQSTSHSSTVESWSTLPSCQNVCQPHHQHHQLLKNHP
                *.*** *** ******..* * *    .* .:. * :* .:.:*  ** ***:**    *

AT1G28360.1     ----------PPVPPSSDH--------------HHQHHRIFLRTGVLNDKTS--------
pp028444_Pp1s12 NSLNCHQLYGPSVASEADSWRTSLDLNLSAMVPHDPDHQVEEMAQVLNESISAGRSYVLP
                          *.*...:*               *. .*::   : ***:. *        

AT1G28360.1     -----------DYSSTEAPLYF-----------------------TS-------------
pp028444_Pp1s12 GNAGELSQSSKRHSSTPIQTLFQDTMGKTSYSAKKPSILAVPPVRTSAIPWSLGARWDQN
                            :***     *                       **             

AT1G28360.1     ------------SPNTATS---------------------SPGYQVVGFPMMNSSPSPVT
pp028444_Pp1s12 VALPTGIQPTLLTPGSAVSPETRACSSDCDSSSSVIVNSESP--EIVATPQQRTKP---V
                            :*.:*.*                     **  ::*. *  .:.*   .

AT1G28360.1     VRRGLA--IDLNEPPPLWL---------
pp028444_Pp1s12 LRRNFPFLLDLNSPPCLDEEPAVTAVGN
                :**.:.  :***.** *
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     - - - - - - M A S T T C A R E - - - V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y
pp028444_Pp1s12    M A A R D E K A S T K S S Q A Y Q G V H F R G V R K R P W G R F A A E I R D P W K K T R V W L G T F D T A E E A A R A Y
 
AT1G28360.1     D G A A R F L R G I K A K T N F P S P L S L D - - - L N H L P S A P S A A T - A A A N N - - Q P - H Q H Q Q L W F A A P
pp028444_Pp1s12    D S A A R A L R G S K A K T N F A C P P S S D D Q S T S H S S T V E S W S T L P S C Q N V C Q P H H Q H H Q L L K N H P
 
AT1G28360.1     - - - - - - - - - - P P V P P S S D H - - - - - - - - - - - - - - H H Q H H R I F L R T G V L N D K T S - - - - - - - -
pp028444_Pp1s12    N S L N C H Q L Y G P S V A S E A D S W R T S L D L N L S A M V P H D P D H Q V E E M A Q V L N E S I S A G R S Y V L P
 
AT1G28360.1     - - - - - - - - - - - D Y S S T E A P L Y F - - - - - - - - - - - - - - - - - - - - - - - T S - - - - - - - - - - - - -
pp028444_Pp1s12    G N A G E L S Q S S K R H S S T P I Q T L F Q D T M G K T S Y S A K K P S I L A V P P V R T S A I P W S L G A R W D Q N
 
AT1G28360.1     - - - - - - - - - - - - S P N T A T S - - - - - - - - - - - - - - - - - - - - - S P G Y Q V V G F P M M N S S P S P V T
pp028444_Pp1s12    V A L P T G I Q P T L L T P G S A V S P E T R A C S S D C D S S S S V I V N S E S P - - E I V A T P Q Q R T K P - - - V
 
AT1G28360.1     V R R G L A - - I D L N E P P P L W L - - - - - - - - -
pp028444_Pp1s12    L R R N F P F L L D L N S P P C L D E E P A V T A V G N
 
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