fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024746 RRGLPIDLNEPPPLWL in 164/174 AT1G28360.1 not_1st 0.485623003 II
Get sequence file
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28360.1     MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG
pt024746_POPTR_ MASS---REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG
                ***:   ** ********************************************** ***

AT1G28360.1     IKAKTNFPSP-----LSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH
pt024746_POPTR_ AKAKTNFPSPPSTSGLSFDLN-LPS-----------DPHHHHLHWSSCP---------HL
                 *********     **:*** ***           :**:*:  * :.*         * 

AT1G28360.1     QHHRI-----FLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPGYQVVGFPMMNSSP--
pt024746_POPTR_ GSHRFGGFGEFLQTGVVFNEMNLHATEAAAASGSVAKN---EGPG-AVAGTP----APEN
                  **:     **:***: :: . :::  *.   : : *   ..**  *.* *    :*  

AT1G28360.1     -SPVT----VRRGLAIDLNEPPPLWL
pt024746_POPTR_ VAPVSFLGMVRRGLPIDLNEPPPLWL
                 :**:    *****.***********
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     M A S T T C A R E V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R F L R G
pt024746_POPTR_    M A S S - - - R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S L R G
 
AT1G28360.1     I K A K T N F P S P - - - - - L S L D L N H L P S A P S A A T A A A N N Q P H Q H Q Q L W F A A P P P V P P S S D H H H
pt024746_POPTR_    A K A K T N F P S P P S T S G L S F D L N - L P S - - - - - - - - - - - D P H H H H L H W S S C P - - - - - - - - - H L
 
AT1G28360.1     Q H H R I - - - - - F L R T G V L N D K T S D Y S S T E A P L Y F T S S P N T A T S S P G Y Q V V G F P M M N S S P - -
pt024746_POPTR_    G S H R F G G F G E F L Q T G V V F N E M N L H A T E A A A A S G S V A K N - - - E G P G - A V A G T P - - - - A P E N
 
AT1G28360.1     - S P V T - - - - V R R G L A I D L N E P P P L W L
pt024746_POPTR_    V A P V S F L G M V R R G L P I D L N E P P P L W L
 
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