fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018447 PPSTSGLSLDLNLPSD in 72/176 AT1G28360.1 1st_1st 0.511182108 Ia
RRGLPIDLNEPPPLWL in 166/176
Pt024746 RRGLPIDLNEPPPLWL in 164/174 AT1G28360.1 not_1st 0.485623003 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G28360.1     MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG
pt018447_POPTR_ MASS---REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG
pt024746_POPTR_ MASS---REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG
                ***:   ** ********************************************** ***

AT1G28360.1     IKAKTNFPSP-----LSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH
pt018447_POPTR_ AKAKTNFPSPPSTSGLSLDLN-LPS-----------DPHHHHLRWGSSP---------HV
pt024746_POPTR_ AKAKTNFPSPPSTSGLSFDLN-LPS-----------DPHHHHLHWSSCP---------HL
                 *********     **:*** ***           :**:*:  * :.*         * 

AT1G28360.1     QHHRI-----FLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPG-YQVVGFPM-MNSSP
pt018447_POPTR_ GSHRFGGLGEFLQTGVVFKEM-NFNATEAAA--ASGPVVKIEGPGVGAVAGAPVPENVAP
pt024746_POPTR_ GSHRFGGFGEFLQTGVVFNEM-NLHATEAAA--ASGSVAKNEGP--GAVAGTPAPENVAP
                  **:     **:***: .:  :  :***.   :*.. .  ..*    *.* *   * :*

AT1G28360.1     SPV--TVRRGLAIDLNEPPPLWL
pt018447_POPTR_ ASFLGMVRRGLPIDLNEPPPLWL
pt024746_POPTR_ VSFLGMVRRGLPIDLNEPPPLWL
                 ..   *****.***********
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     M A S T T C A R E V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R F L R G
pt018447_POPTR_    M A S S - - - R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S L R G
pt024746_POPTR_    M A S S - - - R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S L R G
 
AT1G28360.1     I K A K T N F P S P - - - - - L S L D L N H L P S A P S A A T A A A N N Q P H Q H Q Q L W F A A P P P V P P S S D H H H
pt018447_POPTR_    A K A K T N F P S P P S T S G L S L D L N - L P S - - - - - - - - - - - D P H H H H L R W G S S P - - - - - - - - - H V
pt024746_POPTR_    A K A K T N F P S P P S T S G L S F D L N - L P S - - - - - - - - - - - D P H H H H L H W S S C P - - - - - - - - - H L
 
AT1G28360.1     Q H H R I - - - - - F L R T G V L N D K T S D Y S S T E A P L Y F T S S P N T A T S S P G - Y Q V V G F P M - M N S S P
pt018447_POPTR_    G S H R F G G L G E F L Q T G V V F K E M - N F N A T E A A A - - A S G P V V K I E G P G V G A V A G A P V P E N V A P
pt024746_POPTR_    G S H R F G G F G E F L Q T G V V F N E M - N L H A T E A A A - - A S G S V A K N E G P - - G A V A G T P A P E N V A P
 
AT1G28360.1     S P V - - T V R R G L A I D L N E P P P L W L
pt018447_POPTR_    A S F L G M V R R G L P I D L N E P P P L W L
pt024746_POPTR_    V S F L G M V R R G L P I D L N E P P P L W L
 
0