fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb008876 not found in 92aa AT1G28360.1 1st_1st 0.361022364 Ib
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28360.1     ------MASTTCAREVH------------------YRGVRKRPWGRYAAEIRDPWKKTRV
Sb008876_Sorbi1 PSSRSKMDPTLRAVLGHGGGDGGARGGGGGGGAERFRGVRKRPWGRYAAEIRDPWKKTRV
                      * .*  *   *                  :************************

AT1G28360.1     WLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLNHLPSAPSAATAAANNQPHQH
Sb008876_Sorbi1 WLGTFDTPAEAALAYDRAARTLRGAKAKTNFP----------------------------
                ******** ******* *** *** *******                            

AT1G28360.1     QQLWFAAPPPVPPSSDHHHQHHRIFLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPGY
Sb008876_Sorbi1 ------------------------------------------------------------
                                                                            

AT1G28360.1     QVVGFPMMNSSPSPVTVRRGLAIDLNEPPPLWL
Sb008876_Sorbi1 ---------------------------------
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     - - - - - - M A S T T C A R E V H - - - - - - - - - - - - - - - - - - Y R G V R K R P W G R Y A A E I R D P W K K T R V
Sb008876_Sorbi1    P S S R S K M D P T L R A V L G H G G G D G G A R G G G G G G G A E R F R G V R K R P W G R Y A A E I R D P W K K T R V
 
AT1G28360.1     W L G T F D T P E E A A L A Y D G A A R F L R G I K A K T N F P S P L S L D L N H L P S A P S A A T A A A N N Q P H Q H
Sb008876_Sorbi1    W L G T F D T P A E A A L A Y D R A A R T L R G A K A K T N F P - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G28360.1     Q Q L W F A A P P P V P P S S D H H H Q H H R I F L R T G V L N D K T S D Y S S T E A P L Y F T S S P N T A T S S P G Y
Sb008876_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G28360.1     Q V V G F P M M N S S P S P V T V R R G L A I D L N E P P P L W L
Sb008876_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
0