fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041516 RRGIPIDLNEPPPMWL in 162/172 AT1G28360.1 not_1st 0.466453674 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28360.1     MA---STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARF
gm041516_Glyma1 MAPSSSASASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARS
                **   *::.:** ********************************************** 

AT1G28360.1     LRGIKAKTNFP--SPLSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH
gm041516_Glyma1 LRGAKAKTNFPPAPPLCLDLN-------------------------------VPSSDHRW
                *** *******  .**.****                                *****: 

AT1G28360.1     QHH--------RIFLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSP--GYQVV--GFPM
gm041516_Glyma1 PHHVPPRSLVLSDFLHTAVLR----DIDPPQQP--FPPAAAVAHRNPHGGAMPVGGGVQV
                 **          **:*.**.    * ...: *  *..:. .*  .*  *   *  *. :

AT1G28360.1     MNSSPSPV---TVRRGLAIDLNEPPPLWL
gm041516_Glyma1 MEGSPTASFLGFVRRGIPIDLNEPPPMWL
                *:.**:.     ****:.********:**
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     M A - - - S T T C A R E V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R F
gm041516_Glyma1    M A P S S S A S A S R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S
 
AT1G28360.1     L R G I K A K T N F P - - S P L S L D L N H L P S A P S A A T A A A N N Q P H Q H Q Q L W F A A P P P V P P S S D H H H
gm041516_Glyma1    L R G A K A K T N F P P A P P L C L D L N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V P S S D H R W
 
AT1G28360.1     Q H H - - - - - - - - R I F L R T G V L N D K T S D Y S S T E A P L Y F T S S P N T A T S S P - - G Y Q V V - - G F P M
gm041516_Glyma1    P H H V P P R S L V L S D F L H T A V L R - - - - D I D P P Q Q P - - F P P A A A V A H R N P H G G A M P V G G G V Q V
 
AT1G28360.1     M N S S P S P V - - - T V R R G L A I D L N E P P P L W L
gm041516_Glyma1    M E G S P T A S F L G F V R R G I P I D L N E P P P M W L
 
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