fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28360.1 PSPLSLDLNHLPSAPSA at 72/189 in AT1G28360.1
RRGLAIDLNEPPPLWL at 178/189 in AT1G28360.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm036997 RRGIPIDLNEPPPLWL in 153/163 AT1G28360.1 1st_1st 0.482428115 Ia
Gm041516 RRGIPIDLNEPPPMWL in 162/172 AT1G28360.1 not_1st 0.466453674 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G28360.1     MA---STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARF
gm036997_Glyma1 MA---SSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARS
gm041516_Glyma1 MAPSSSASASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARS
                **   *::.:** ********************************************** 

AT1G28360.1     LRGIKAKTNFP--SPLSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHH
gm036997_Glyma1 LRGAKAKTNFPPAPPLCLDLN-------------------------------VPSSDHRW
gm041516_Glyma1 LRGAKAKTNFPPAPPLCLDLN-------------------------------VPSSDHRW
                *** *******  .**.****                                *****: 

AT1G28360.1     QHH--------RIFLRTGVLNDKTSDYSSTEAP-LYFTSSPN-TATSSPGYQVV----GF
gm036997_Glyma1 P-HVPPRSLVLSEFLHTAVLRD-------IEPPQLPFPPAAAIVAHRSPH------AGGV
gm041516_Glyma1 PHHVPPRSLVLSDFLHTAVLRD-------IDPPQQPFPPAAA-VAHRNPHGGAMPVGGGV
                  *          **:*.**.*        :.*   *..:.  .*  .*         *.

AT1G28360.1     PMMNSSPSPV---TVRRGLAIDLNEPPPLWL
gm036997_Glyma1 QVVESSPTASFLGLVRRGIPIDLNEPPPLWL
gm041516_Glyma1 QVMEGSPTASFLGFVRRGIPIDLNEPPPMWL
                 :::.**:.     ****:.********:**
BoxShade v3.31 C (beta, 970507) Output
AT1G28360.1     M A - - - S T T C A R E V H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R F
gm036997_Glyma1    M A - - - S S S A S R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S
gm041516_Glyma1    M A P S S S A S A S R E G H Y R G V R K R P W G R Y A A E I R D P W K K T R V W L G T F D T P E E A A L A Y D G A A R S
 
AT1G28360.1     L R G I K A K T N F P - - S P L S L D L N H L P S A P S A A T A A A N N Q P H Q H Q Q L W F A A P P P V P P S S D H H H
gm036997_Glyma1    L R G A K A K T N F P P A P P L C L D L N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V P S S D H R W
gm041516_Glyma1    L R G A K A K T N F P P A P P L C L D L N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V P S S D H R W
 
AT1G28360.1     Q H H - - - - - - - - R I F L R T G V L N D K T S D Y S S T E A P - L Y F T S S P N - T A T S S P G Y Q V V - - - - G F
gm036997_Glyma1    P - H V P P R S L V L S E F L H T A V L R D - - - - - - - I E P P Q L P F P P A A A I V A H R S P H - - - - - - A G G V
gm041516_Glyma1    P H H V P P R S L V L S D F L H T A V L R D - - - - - - - I D P P Q Q P F P P A A A - V A H R N P H G G A M P V G G G V
 
AT1G28360.1     P M M N S S P S P V - - - T V R R G L A I D L N E P P P L W L
gm036997_Glyma1    Q V V E S S P T A S F L G L V R R G I P I D L N E P P P L W L
gm041516_Glyma1    Q V M E G S P T A S F L G F V R R G I P I D L N E P P P M W L
 
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