fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28370.1 GRRVVLDLDLNFPPPPEN at 153/166 in AT1G28370.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt019626 SSDAPLDLNLGPAVSTV in 136/233 AT1G28370.1 1st_1st 0.440298507 Ia
PRRSVDLDLNLPPPPE in 221/233
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28370.1     MAPTVKTAAVKTN---------EGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDT
pt019626_POPTR_ MAPREKTAAVKASGGGIVGGGGGGKEVHFRGVRKRPWGRYAAEIRDPSKKSRVWLGTFDT
                ***  ******:.          *: *::****************** ************

AT1G28370.1     PEEAARAYDKRAIEFRGAKAKTNFP---CYNINAHCLSL------------------TQS
pt019626_POPTR_ AEEAARAYDTAAREFRGSKAKTNFPYPSCENVKKNVLSIDSNKKAASKNNSGGGGGNNQS
                .********. * ****:*******   * *:: : **:                  .**

AT1G28370.1     LSQSSTVE---SSFP-NLNLGSDSVSSRFPFPKIQVKAGM--------------MVFDE-
pt019626_POPTR_ PSQSSTVEFCSSDAPLDLNLGPAVSTVRLPFQPMAMNQQQVVYFDAFMKSQYRRMVFDHG
                 *******   *. * :****.   : *:**  : ::                 ****. 

AT1G28370.1     ----------------RSESDSSSVV----MDVVRYEGRRVVLDLDLNFPPPPEN-
pt019626_POPTR_ YHHHPNQPVIFSCGGVLSDSDSSSVVDLNHQDV---KTPRRSVDLDLNLPPPPEIA
                                 *:*******     **   :  *  :*****:*****
BoxShade v3.31 C (beta, 970507) Output
AT1G28370.1     M A P T V K T A A V K T N - - - - - - - - - E G N G V R Y R G V R K R P W G R Y A A E I R D P F K K S R V W L G T F D T
pt019626_POPTR_    M A P R E K T A A V K A S G G G I V G G G G G G K E V H F R G V R K R P W G R Y A A E I R D P S K K S R V W L G T F D T
 
AT1G28370.1     P E E A A R A Y D K R A I E F R G A K A K T N F P - - - C Y N I N A H C L S L - - - - - - - - - - - - - - - - - - T Q S
pt019626_POPTR_    A E E A A R A Y D T A A R E F R G S K A K T N F P Y P S C E N V K K N V L S I D S N K K A A S K N N S G G G G G N N Q S
 
AT1G28370.1     L S Q S S T V E - - - S S F P - N L N L G S D S V S S R F P F P K I Q V K A G M - - - - - - - - - - - - - - M V F D E -
pt019626_POPTR_    P S Q S S T V E F C S S D A P L D L N L G P A V S T V R L P F Q P M A M N Q Q Q V V Y F D A F M K S Q Y R R M V F D H G
 
AT1G28370.1     - - - - - - - - - - - - - - - - R S E S D S S S V V - - - - M D V V R Y E G R R V V L D L D L N F P P P P E N -
pt019626_POPTR_    Y H H H P N Q P V I F S C G G V L S D S D S S S V V D L N H Q D V - - - K T P R R S V D L D L N L P P P P E I A
 
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