fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28370.1 GRRVVLDLDLNFPPPPEN at 153/166 in AT1G28370.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os018844 VPASPSLDLSLGMSAM in 139/222 AT3G20310.1 not_not 0.410447761 III
PAVGVGLDLNLPPPIE in 210/222
Os004257 MPLPPTLDLDLFHRAA in 128/235 AT3G15210.1 not_not 0.410447761 III
NKAAAFDLDLNRPPPVEN in 223/235
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G28370.1     MAP---TVKTAAVKTNEGNGV-----------RYRGVRKRPWGRYAAEIRDPFKKSRVWL
Os004257_Os01t0 MAPRAATVEKVAVAPPTGLGLGVGGGVGAGGPHYRGVRKRPWGRYAAEIRDPAKKSRVWL
Os018844_Os04t0 MAPRN-AAEAVAVAVAEGGGAGM-------EPRFRGVRKRPWGRYAAEIRDPARKARVWL
                ***   :.: .**    * *            ::****************** :*:****

AT1G28370.1     GTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINAH--------CLSLTQSL-------
Os004257_Os01t0 GTYDTAEEAARAYDAAAREFRGAKAKTNFP-----------------FASQSMVGCGGSP
Os018844_Os04t0 GTFDTAEAAARAYDSAALHFRGPKAKTNFPVAFAHAHHHAPPPPLPKAAALAVVS-----
                **:**.* ******  * .***.*******                   : ::       

AT1G28370.1     SQSSTVESSF----------------------PNLNLG----SDSVSS------RFPF--
Os004257_Os01t0 SSNSTVDTGGGGVQTPMRA---------MPLPPTLDLDLFHRAAAVTAVAGTGVRFPFRG
Os018844_Os04t0 PTSSTVESSS--RDTPAAAPVAAAAKAQVPASPSLDLSLGM-SAMVAAQ-------PF--
                . .***::.                       *.*:*.    :  *::        **  

AT1G28370.1     ------------------------------------PK-IQVKAGMMVFDERSESDSSSV
Os004257_Os01t0 YPVARPATHPYFFYEQAAA---AAAAEAGYRMMKLAPP-VTVAA-----VAQSDSDSSSV
Os018844_Os04t0 -----------LFLDPRVAVTVAVAAPVPRR-----PAVVSVKKEVARLDEQSDTGSSSS
                                                    *  : *         :*::.*** 

AT1G28370.1     VMDVVR-----YEGRRVVLDLDLNFPPPPEN-
Os004257_Os01t0 V-DLAPSPPAVTANKAAAFDLDLNRPPPVEN-
Os018844_Os04t0 VVDASP---------AVGVGLDLNLPPPIEEA
                * *             . ..**** *** *:
BoxShade v3.31 C (beta, 970507) Output
AT1G28370.1     M A P - - - T V K T A A V K T N E G N G V - - - - - - - - - - - R Y R G V R K R P W G R Y A A E I R D P F K K S R V W L
Os004257_Os01t0    M A P R A A T V E K V A V A P P T G L G L G V G G G V G A G G P H Y R G V R K R P W G R Y A A E I R D P A K K S R V W L
Os018844_Os04t0    M A P R N - A A E A V A V A V A E G G G A G M - - - - - - - E P R F R G V R K R P W G R Y A A E I R D P A R K A R V W L
 
AT1G28370.1     G T F D T P E E A A R A Y D K R A I E F R G A K A K T N F P C Y N I N A H - - - - - - - - C L S L T Q S L - - - - - - -
Os004257_Os01t0    G T Y D T A E E A A R A Y D A A A R E F R G A K A K T N F P - - - - - - - - - - - - - - - - - F A S Q S M V G C G G S P
Os018844_Os04t0    G T F D T A E A A A R A Y D S A A L H F R G P K A K T N F P V A F A H A H H H A P P P P L P K A A A L A V V S - - - - -
 
AT1G28370.1     S Q S S T V E S S F - - - - - - - - - - - - - - - - - - - - - - P N L N L G - - - - S D S V S S - - - - - - R F P F - -
Os004257_Os01t0    S S N S T V D T G G G G V Q T P M R A - - - - - - - - - M P L P P T L D L D L F H R A A A V T A V A G T G V R F P F R G
Os018844_Os04t0    P T S S T V E S S S - - R D T P A A A P V A A A A K A Q V P A S P S L D L S L G M - S A M V A A Q - - - - - - - P F - -
 
AT1G28370.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - P K - I Q V K A G M M V F D E R S E S D S S S V
Os004257_Os01t0    Y P V A R P A T H P Y F F Y E Q A A A - - - A A A A E A G Y R M M K L A P P - V T V A A - - - - - V A Q S D S D S S S V
Os018844_Os04t0    - - - - - - - - - - - L F L D P R V A V T V A V A A P V P R R - - - - - P A V V S V K K E V A R L D E Q S D T G S S S S
 
AT1G28370.1     V M D V V R - - - - - Y E G R R V V L D L D L N F P P P P E N -
Os004257_Os01t0    V - D L A P S P P A V T A N K A A A F D L D L N R P P P V E N -
Os018844_Os04t0    V V D A S P - - - - - - - - - A V G V G L D L N L P P P I E E A
 
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