fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28370.1 GRRVVLDLDLNFPPPPEN at 153/166 in AT1G28370.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os022250 MPIPPSLELDLFHRAA in 133/236 AT5G44210.1 1st_not 0.414179104 II
KKAIAFDLDLNCPPPMEV in 224/236
Os018844 VPASPSLDLSLGMSAM in 139/222 AT3G20310.1 not_not 0.410447761 III
PAVGVGLDLNLPPPIE in 210/222
Os004257 MPLPPTLDLDLFHRAA in 128/235 AT3G15210.1 not_not 0.410447761 III
NKAAAFDLDLNRPPPVEN in 223/235
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G28370.1     MAPTVKT-----AAVKTNEGNGV-------------RYRGVRKRPWGRYAAEIRDPFKKS
Os022250_Os05t0 MAPRTSDKTMSPAAAATGLALGVGGVAGAAAVGTGQHFRGVRKRPWGRYAAEIRDPAKKS
Os018844_Os04t0 MAPRNAA-EAVAVAVAEGGGAGM-----------EPRFRGVRKRPWGRYAAEIRDPARKA
Os004257_Os01t0 MAPRAATVEKVAVAPPTGLGLGVGGGVGAG----GPHYRGVRKRPWGRYAAEIRDPAKKS
                ***         .*   . . *:             ::****************** :*:

AT1G28370.1     RVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINAH----------CLSLTQSLS
Os022250_Os05t0 RVWLGTFDTAEEAARAYDAAAREYRGAKAKTNFP-YPNGAP----------AAGVNSGSS
Os018844_Os04t0 RVWLGTFDTAEAAARAYDSAALHFRGPKAKTNFPVAFAHAHHHAPPPPLPKAAALAVVSP
Os004257_Os01t0 RVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFP-FASQS-----------MVGCGGSPS
                ******:**.* ******  * .:**.*******     :             .     .

AT1G28370.1     QSSTVESSF--------------------PNLNL----------GSDSVSSRFPFPKIQV
Os022250_Os05t0 NSSTVESFGSDV--QAPMKA-----MPIPPSLELDLFHRAAAAAAAGAGGMRFPFEGYPV
Os018844_Os04t0 TSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVA-----------------
Os004257_Os01t0 SNSTVDTGGGGV--QTPMRA-----MPLPPTLDLDLFHRAAAVTAVAGTGVRFPFRGYPV
                 .***::                      *.*:*                          

AT1G28370.1     K--------------------AG--MMVFDE-------------------RSESDSSSVV
Os022250_Os05t0 ----SHPYYFFGQAAAAAAA-SGCRMLKIAPAPVTVAAL----------AQSDSDSSSIV
Os018844_Os04t0 ----AQPFLFLDPRVAVTVAVAA-------PVPRRPAVVSVKKEVARLDEQSDTGSSSSV
Os004257_Os01t0 ARPATHPYFFYEQAAAAAAAEAGYRMMKLAP-PVTVAAV----------AQSDSDSSSVV
                                     :.                           :*::.*** *

AT1G28370.1     MDV-----VRYEGRRVVLDLDLNFPPPPEN-
Os022250_Os05t0 -DLAPSPPAALAKKAIAFDLDLNCPPPMEV-
Os018844_Os04t0 VDASP---------AVGVGLDLNLPPPIEEA
Os004257_Os01t0 -DLAPSPPAVTANKAAAFDLDLNRPPPVEN-
                 *               ..**** *** *
BoxShade v3.31 C (beta, 970507) Output
AT1G28370.1     M A P T V K T - - - - - A A V K T N E G N G V - - - - - - - - - - - - - R Y R G V R K R P W G R Y A A E I R D P F K K S
Os022250_Os05t0    M A P R T S D K T M S P A A A A T G L A L G V G G V A G A A A V G T G Q H F R G V R K R P W G R Y A A E I R D P A K K S
Os018844_Os04t0    M A P R N A A - E A V A V A V A E G G G A G M - - - - - - - - - - - E P R F R G V R K R P W G R Y A A E I R D P A R K A
Os004257_Os01t0    M A P R A A T V E K V A V A P P T G L G L G V G G G V G A G - - - - G P H Y R G V R K R P W G R Y A A E I R D P A K K S
 
AT1G28370.1     R V W L G T F D T P E E A A R A Y D K R A I E F R G A K A K T N F P C Y N I N A H - - - - - - - - - - C L S L T Q S L S
Os022250_Os05t0    R V W L G T F D T A E E A A R A Y D A A A R E Y R G A K A K T N F P - Y P N G A P - - - - - - - - - - A A G V N S G S S
Os018844_Os04t0    R V W L G T F D T A E A A A R A Y D S A A L H F R G P K A K T N F P V A F A H A H H H A P P P P L P K A A A L A V V S P
Os004257_Os01t0    R V W L G T Y D T A E E A A R A Y D A A A R E F R G A K A K T N F P - F A S Q S - - - - - - - - - - - M V G C G G S P S
 
AT1G28370.1     Q S S T V E S S F - - - - - - - - - - - - - - - - - - - - P N L N L - - - - - - - - - - G S D S V S S R F P F P K I Q V
Os022250_Os05t0    N S S T V E S F G S D V - - Q A P M K A - - - - - M P I P P S L E L D L F H R A A A A A A A G A G G M R F P F E G Y P V
Os018844_Os04t0    T S S T V E S S S R D T P A A A P V A A A A K A Q V P A S P S L D L S L G M S A M V A - - - - - - - - - - - - - - - - -
Os004257_Os01t0    S N S T V D T G G G G V - - Q T P M R A - - - - - M P L P P T L D L D L F H R A A A V T A V A G T G V R F P F R G Y P V
 
AT1G28370.1     K - - - - - - - - - - - - - - - - - - - - A G - - M M V F D E - - - - - - - - - - - - - - - - - - - R S E S D S S S V V
Os022250_Os05t0    - - - - S H P Y Y F F G Q A A A A A A A - S G C R M L K I A P A P V T V A A L - - - - - - - - - - A Q S D S D S S S I V
Os018844_Os04t0    - - - - A Q P F L F L D P R V A V T V A V A A - - - - - - - P V P R R P A V V S V K K E V A R L D E Q S D T G S S S S V
Os004257_Os01t0    A R P A T H P Y F F Y E Q A A A A A A A E A G Y R M M K L A P - P V T V A A V - - - - - - - - - - A Q S D S D S S S V V
 
AT1G28370.1     M D V - - - - - V R Y E G R R V V L D L D L N F P P P P E N -
Os022250_Os05t0    - D L A P S P P A A L A K K A I A F D L D L N C P P P M E V -
Os018844_Os04t0    V D A S P - - - - - - - - - A V G V G L D L N L P P P I E E A
Os004257_Os01t0    - D L A P S P P A V T A N K A A A F D L D L N R P P P V E N -
 
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