fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G28370.1 GRRVVLDLDLNFPPPPEN at 153/166 in AT1G28370.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm016091 PHRKVLDLDLNVPPPPEV in 170/183 AT5G44210.1 1st_not 0.444029850 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G28370.1     MAP-------TVKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPE
gm016091_Glyma0 MAPRDINRSNVVVVAGVSNPTHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAE
                ***       .* .*.*..   : :******************** **:*********.*

AT1G28370.1     EAARAYDKRAIEFRGAKAKTNFPCYNINAHCLSLTQSLSQSSTVESSFP---NLNLGSDS
gm016091_Glyma0 EAARAYDTAAREFRGTKAKTNFPTHAAAA------RSPSQSSTLDSSSPPPLDLTLAAPL
                *******. * ****:******* :   *      :* *****::** *   :*.*.:  

AT1G28370.1     VSSR---FP----------FPKIQVKAGMMVFD----ERSESDSSSVVMDVVRYEGRRVV
gm016091_Glyma0 TAAGALVFPVARPVVFFDAFARAEVRAS---FDLPVAGFSDSDSSSVV-DYERVPHRK-V
                .::    **          *.: :*:*.   **      *:******* *  *   *: *

AT1G28370.1     LDLDLNFPPPPEN-
gm016091_Glyma0 LDLDLNVPPPPEVA
                ******.*****
BoxShade v3.31 C (beta, 970507) Output
AT1G28370.1     M A P - - - - - - - T V K T A A V K T N E G N G V R Y R G V R K R P W G R Y A A E I R D P F K K S R V W L G T F D T P E
gm016091_Glyma0    M A P R D I N R S N V V V V A G V S N P T H K E I R Y R G V R K R P W G R Y A A E I R D P G K K T R V W L G T F D T A E
 
AT1G28370.1     E A A R A Y D K R A I E F R G A K A K T N F P C Y N I N A H C L S L T Q S L S Q S S T V E S S F P - - - N L N L G S D S
gm016091_Glyma0    E A A R A Y D T A A R E F R G T K A K T N F P T H A A A A - - - - - - R S P S Q S S T L D S S S P P P L D L T L A A P L
 
AT1G28370.1     V S S R - - - F P - - - - - - - - - - F P K I Q V K A G M M V F D - - - - E R S E S D S S S V V M D V V R Y E G R R V V
gm016091_Glyma0    T A A G A L V F P V A R P V V F F D A F A R A E V R A S - - - F D L P V A G F S D S D S S S V V - D Y E R V P H R K - V
 
AT1G28370.1     L D L D L N F P P P P E N -
gm016091_Glyma0    L D L D L N V P P P P E V A
 
0