fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G30135.1 LQQNCDLELRLFPTSY at 7/131 in AT1G30135.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm012386 MRKNCKLELRLFPPSL in 6/134 AT1G30135.1 1st_1st 0.389380530 Ib
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G30135.1     MKLQQNCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQ---PNEESQR-----ITIFYNG
gm012386_Glyma0 --MRKNCKLELRLFPPSL----SDLRPMMEAEVSDSPQQQDPHHQQQQQLQHPLTIFYDG
                  :::**.*******.*     **  .::*:  *..**   *:.:.*:     :****:*

AT1G30135.1     KMCFSSDVTHLQARSIISIASREMKTK-SSSNGSDP--PNKSTSFHHNQL-PNPKASMKK
gm012386_Glyma0 KICV-SDVTELQARSILMLANKETERRVMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKR
                *:*. ****.******: :*.:* : :  :..**:*  *    * *:*   *..  ***:

AT1G30135.1     SLQSFLQKRKIRIQATSPYHSRR
gm012386_Glyma0 SLQRFLQKRKNRVQETSPYHH--
                *** ****** *:* *****
BoxShade v3.31 C (beta, 970507) Output
AT1G30135.1     M K L Q Q N C D L E L R L F P T S Y D S D S S D T T S V V E S T S S G N P Q - - - P N E E S Q R - - - - - I T I F Y N G
gm012386_Glyma0    - - M R K N C K L E L R L F P P S L - - - - S D L R P M M E A E V S D S P Q Q Q D P H H Q Q Q Q Q L Q H P L T I F Y D G
 
AT1G30135.1     K M C F S S D V T H L Q A R S I I S I A S R E M K T K - S S S N G S D P - - P N K S T S F H H N Q L - P N P K A S M K K
gm012386_Glyma0    K I C V - S D V T E L Q A R S I L M L A N K E T E R R V M T P T G S E P S S P I L L Q S P H N N M Y S P S T G L S M K R
 
AT1G30135.1     S L Q S F L Q K R K I R I Q A T S P Y H S R R
gm012386_Glyma0    S L Q R F L Q K R K N R V Q E T S P Y H H - -
 
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