fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G30500.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024440 not found in 208aa AT1G30500.2 not_1st 0.613981762 II
Pt028621 not found in 223aa AT1G30500.2 not_1st 0.610942249 II
Pt028623 not found in 157aa AT1G30500.2 not_1st 0.443768996 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G30500.2     -------------MTSSIHELS----DNIGSHEKQEQRDSHFQPPIPSA---------RN
pt028621_POPTR_ MRFEFGDSVCITAMTSSLHDLSAGCPDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPN
pt024440_POPTR_ -------------MTSSVHDLS----DNSEAGEQQKHSEPQVQTSSPANALAHPGISPPN
pt028623_POPTR_ ------------MMVGWLEILY--------------------QTTRPRS-----------
                             *.. :. *                     *.. *             

AT1G30500.2     YESIVTSLVYSDP--GTTNSMAPGQYPYPDPYYRSIFAP------PPQPYTG---VHLQL
pt028621_POPTR_ VQ-------YATPQLGAGHAMAPATYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQL
pt024440_POPTR_ FQ-------YATPQLGAGHAMAPAAYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMVHLQL
pt028623_POPTR_ -----------------------IAFTYEQTFFFFLDTSNSHERTSNQ-------VHLQL
                                         :.* :.::  : :.      . *       *****

AT1G30500.2     MGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLH
pt028621_POPTR_ MGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQH
pt024440_POPTR_ MGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIKSRKPYLHESRHQH
pt028623_POPTR_ MGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQH
                **:** *******************************: **:.*.************* *

AT1G30500.2     AIRRPRGCGGRFLNAKK-EDEHHEDSSHEEKS----NLSAGKSAMAASSGTS
pt028621_POPTR_ ALKRARGCGGRFLNSKKQENQEHNGVASGDKSQSNINLNSDKNDIVSSND--
pt024440_POPTR_ ALKRARGCGGRFLNSKKKENQQQNGMAPGDKSQSNVNLNANKNDIASLDDKS
pt028623_POPTR_ ALKRARGCGGRFLNSKKQENQEHNGVASGDKSQSNINLNSDKNDIVSSND--
                *::*.*********:** *::.::. :  :**    **.:.*. :.: ..
BoxShade v3.31 C (beta, 970507) Output
AT1G30500.2     - - - - - - - - - - - - - M T S S I H E L S - - - - D N I G S H E K Q E Q R D S H F Q P P I P S A - - - - - - - - - R N
pt028621_POPTR_    M R F E F G D S V C I T A M T S S L H D L S A G C P D N S E A D E Q Q N E S E P Q I Q S S S P A M A Q A H P G F S T P N
pt024440_POPTR_    - - - - - - - - - - - - - M T S S V H D L S - - - - D N S E A G E Q Q K H S E P Q V Q T S S P A N A L A H P G I S P P N
pt028623_POPTR_    - - - - - - - - - - - - M M V G W L E I L Y - - - - - - - - - - - - - - - - - - - - Q T T R P R S - - - - - - - - - - -
 
AT1G30500.2     Y E S I V T S L V Y S D P - - G T T N S M A P G Q Y P Y P D P Y Y R S I F A P - - - - - - P P Q P Y T G - - - V H L Q L
pt028621_POPTR_    V Q - - - - - - - Y A T P Q L G A G H A M A P A T Y P Y P D P Y Y R S I F A P Y D P Q P Y P P Q P Y G A Q P M V H L Q L
pt024440_POPTR_    F Q - - - - - - - Y A T P Q L G A G H A M A P A A Y P Y P D P Y Y R S I F A P C D A Q P Y A P Q P Y G A Q P M V H L Q L
pt028623_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - I A F T Y E Q T F F F F L D T S N S H E R T S N Q - - - - - - - V H L Q L
 
AT1G30500.2     M G V Q Q Q G V P L P S D A V E E P V F V N A K Q Y H G I L R R R Q S R A R L E S Q N K V I K S R K P Y L H E S R H L H
pt028621_POPTR_    M G I Q Q A G V P L P S D A V E E P V F V N A K Q Y H G I L R R R Q S R A K A E S E S K A I K S R K P Y L H E S R H Q H
pt024440_POPTR_    M G I Q Q A G V P L P S D A V E E P V F V N A K Q Y H G I L R R R Q S R A K A E S E N K A I K S R K P Y L H E S R H Q H
pt028623_POPTR_    M G I Q Q A G V P L P S D A V E E P V F V N A K Q Y H G I L R R R Q S R A K A E S E S K A I K S R K P Y L H E S R H Q H
 
AT1G30500.2     A I R R P R G C G G R F L N A K K - E D E H H E D S S H E E K S - - - - N L S A G K S A M A A S S G T S
pt028621_POPTR_    A L K R A R G C G G R F L N S K K Q E N Q E H N G V A S G D K S Q S N I N L N S D K N D I V S S N D - -
pt024440_POPTR_    A L K R A R G C G G R F L N S K K K E N Q Q Q N G M A P G D K S Q S N V N L N A N K N D I A S L D D K S
pt028623_POPTR_    A L K R A R G C G G R F L N S K K Q E N Q E H N G V A S G D K S Q S N I N L N S D K N D I V S S N D - -
 
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