fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G30500.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt028622 not found in 205aa AT1G30500.2 1st_1st 0.629179331 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G30500.2     -------------MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS
pt028622_POPTR_ MRFEFGDSVCITAMTSSLHDLSDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPNVQYA
                             ****:*:****  :.*:*:: :.::*.. *: *: : .: *. * *:

AT1G30500.2     DP--GTTNSMAPGQYPYPDPYYRSIFAP------PPQPYTG---VHLQLMGVQQQGVPLP
pt028622_POPTR_ TPQLGAGHAMAPATYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQLMGIQQAGVPLP
                 *  *: ::***. **************      ***** .   *******:** *****

AT1G30500.2     SDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGR
pt028622_POPTR_ SDAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQHALKRARGCGGR
                **************************: **:.*.************* **::*.******

AT1G30500.2     FLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS
pt028622_POPTR_ FLNSKKQE-------NQEHNGVASGSDGGAHN----
                ***:**::       ::*:..:::*... * .
BoxShade v3.31 C (beta, 970507) Output
AT1G30500.2     - - - - - - - - - - - - - M T S S I H E L S D N I G S H E K Q E Q R D S H F Q P P I P S - A R N Y E S I V T S L V - Y S
pt028622_POPTR_    M R F E F G D S V C I T A M T S S L H D L S D N S E A D E Q Q N E S E P Q I Q S S S P A M A Q A H P G F S T P N V Q Y A
 
AT1G30500.2     D P - - G T T N S M A P G Q Y P Y P D P Y Y R S I F A P - - - - - - P P Q P Y T G - - - V H L Q L M G V Q Q Q G V P L P
pt028622_POPTR_    T P Q L G A G H A M A P A T Y P Y P D P Y Y R S I F A P Y D P Q P Y P P Q P Y G A Q P M V H L Q L M G I Q Q A G V P L P
 
AT1G30500.2     S D A V E E P V F V N A K Q Y H G I L R R R Q S R A R L E S Q N K V I K S R K P Y L H E S R H L H A I R R P R G C G G R
pt028622_POPTR_    S D A V E E P V F V N A K Q Y H G I L R R R Q S R A K A E S E S K A I K S R K P Y L H E S R H Q H A L K R A R G C G G R
 
AT1G30500.2     F L N A K K E D E H H E D S S H E E K S N L S A G K S A M A A S S G T S
pt028622_POPTR_    F L N S K K Q E - - - - - - - N Q E H N G V A S G S D G G A H N - - - -
 
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