fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G35515.1 DHLDKELNLDLTLGYS at 190/212 in AT1G35515.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt013177 not found in 298aa AT1G22640.1 1st_not 0.592920353 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G35515.1     MGRSPCCEKAHMNKGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINY
pt013177_POPTR_ MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINY
                *********** ****************** ****.******:.****************

AT1G35515.1     LRPDLKRGNFTDGEEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRG
pt013177_POPTR_ LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLVSRG
                ***********: *::**:*****:*******************************:.**

AT1G35515.1     IDPKTHGSIIEP-----------KTTSFHPRN-------------------------EDL
pt013177_POPTR_ IDPQTHRPLNEKTTTTTTATSTTKTTQLNFKNTPPQSLAEISILKSQLDSKYNSTKSNDF
                ***:** .: *            ***.:: :*                         :*:

AT1G35515.1     KSTFPGSVK-LKMETSC---ENCASTSGTTTDEDLRLSVDCDYRYDHLDKELNLDLTLGY
pt013177_POPTR_ LSSLYSSFKPKKIETASLEENNCTSCS-TTTDEEQQ-----QKRESHHDQDINLDLTIGL
                 *:: .*.*  *:**:.   :**:* * *****: :     : * .* *:::*****:* 

AT1G35515.1     SPT---------------------------------------RFVGVG--SCY-------
pt013177_POPTR_ APTTKGESTHTSSNSAESRLQQPVSSRQLFGSVSTGPGCLCWQSVGAGWESCRDCQNHRY
                :**                                       : **.*  **        

AT1G35515.1     ----
pt013177_POPTR_ YCWK
BoxShade v3.31 C (beta, 970507) Output
AT1G35515.1     M G R S P C C E K A H M N K G A W T K E E D Q R L I D Y I R N H G E G S W R S L P K S V G L L R C G K S C R L R W I N Y
pt013177_POPTR_    M G R S P C C E K A H T N K G A W T K E E D Q R L I D Y I R V H G E G C W R S L P K A A G L L R C G K S C R L R W I N Y
 
AT1G35515.1     L R P D L K R G N F T D G E E Q I I V K L H S L F G N K W S L I A G K L P G R T D N E I K N Y W N T H I K R K L L N R G
pt013177_POPTR_    L R P D L K R G N F T E E E D E I I I K L H S L L G N K W S L I A G K L P G R T D N E I K N Y W N T H I K R K L V S R G
 
AT1G35515.1     I D P K T H G S I I E P - - - - - - - - - - - K T T S F H P R N - - - - - - - - - - - - - - - - - - - - - - - - - E D L
pt013177_POPTR_    I D P Q T H R P L N E K T T T T T T A T S T T K T T Q L N F K N T P P Q S L A E I S I L K S Q L D S K Y N S T K S N D F
 
AT1G35515.1     K S T F P G S V K - L K M E T S C - - - E N C A S T S G T T T D E D L R L S V D C D Y R Y D H L D K E L N L D L T L G Y
pt013177_POPTR_    L S S L Y S S F K P K K I E T A S L E E N N C T S C S - T T T D E E Q Q - - - - - Q K R E S H H D Q D I N L D L T I G L
 
AT1G35515.1     S P T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - R F V G V G - - S C Y - - - - - - -
pt013177_POPTR_    A P T T K G E S T H T S S N S A E S R L Q Q P V S S R Q L F G S V S T G P G C L C W Q S V G A G W E S C R D C Q N H R Y
 
AT1G35515.1     - - - -
pt013177_POPTR_    Y C W K
 
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