fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G35515.1 DHLDKELNLDLTLGYS at 190/212 in AT1G35515.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm030520 LERCPDLNLELTISPP in 170/246 AT4G34990.1 1st_not 0.548672566 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G35515.1     MGRSPCCEKAHMNKGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINY
gm030520_Glyma1 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY
                *********** **********:***.*** ****.******:.****************

AT1G35515.1     LRPDLKRGNFTDGEEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRG
gm030520_Glyma1 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG
                ***********: *:::*:*****:*********:*****************:*******

AT1G35515.1     IDPKTHGSIIEPKTTSFHPRNEDLKSTFPGSVKLKMETSCENCASTSGTT----TDEDLR
gm030520_Glyma1 IDPATHRPLNEAATAA------TVTTNISFGKQEQQETSSSNGSVVKGSILERCPDLNLE
                *** ** .: *. *::       :.:.:. . : : ***..* : ..*:     .* :*.

AT1G35515.1     LSVDCDYRYDHLDKELNLDLTLGY-------------------SPT------------RF
gm030520_Glyma1 LTISPPRQQQQTQKNLCFVCSLGLHNSKDCSCNVSNAVTVNNTTPSSAAAAAYDFLGMKT
                *::.   : :: :*:* :  :**                    :*:            : 

AT1G35515.1     VGVGSCY-----
gm030520_Glyma1 SGVWDCTRLEMK
                 ** .*
BoxShade v3.31 C (beta, 970507) Output
AT1G35515.1     M G R S P C C E K A H M N K G A W T K E E D Q R L I D Y I R N H G E G S W R S L P K S V G L L R C G K S C R L R W I N Y
gm030520_Glyma1    M G R S P C C E K A H T N K G A W T K E E D D R L I S Y I R A H G E G C W R S L P K A A G L L R C G K S C R L R W I N Y
 
AT1G35515.1     L R P D L K R G N F T D G E E Q I I V K L H S L F G N K W S L I A G K L P G R T D N E I K N Y W N T H I K R K L L N R G
gm030520_Glyma1    L R P D L K R G N F T E E E D E L I I K L H S L L G N K W S L I A G R L P G R T D N E I K N Y W N T H I R R K L L N R G
 
AT1G35515.1     I D P K T H G S I I E P K T T S F H P R N E D L K S T F P G S V K L K M E T S C E N C A S T S G T T - - - - T D E D L R
gm030520_Glyma1    I D P A T H R P L N E A A T A A - - - - - - T V T T N I S F G K Q E Q Q E T S S S N G S V V K G S I L E R C P D L N L E
 
AT1G35515.1     L S V D C D Y R Y D H L D K E L N L D L T L G Y - - - - - - - - - - - - - - - - - - - S P T - - - - - - - - - - - - R F
gm030520_Glyma1    L T I S P P R Q Q Q Q T Q K N L C F V C S L G L H N S K D C S C N V S N A V T V N N T T P S S A A A A A Y D F L G M K T
 
AT1G35515.1     V G V G S C Y - - - - -
gm030520_Glyma1    S G V W D C T R L E M K
 
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