fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G46768.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039398 not found in 174aa AT1G46768.1 1st_1st 0.509740259 Ia
Pt016489 not found in 155aa AT1G46768.1 1st_1st 0.522727272 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G46768.1     ME--------REQEESTMRK---RRQPPQEEVPNHVATR---KPYRGIRRRKWGKWVAEI
pt016489_POPTR_ ME--GGCCTSSTSTPSSTS------TATTEKRKHSRQQNQE-KPYRGIRMRKWGKWVAEI
gm039398_Glyma1 MEDRDHCCSNNSTMITTTKKRTGRRSPTSDKLKNQHREKQSMKPYRGIRMRKWGKWVAEI
                **             ::         .. ::  :    .   ******* **********

AT1G46768.1     REPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTA---
pt016489_POPTR_ REPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPDLIYQEDELR---------
gm039398_Glyma1 REPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDDQEGSDSVQHGA
                ********:*****:* :*******.********:******:*: *:::           

AT1G46768.1     --DMPAALIREKAAEVGARVDALLASA---APSMAHSTPPVIKPDLNQIPESGDI--
pt016489_POPTR_ --DVSAASIRKKATEVGAKVDALQTAV-HASPEDNSRVLLSEKPDLNKFPENSDEE-
gm039398_Glyma1 AGNMSADSIRRKATQVGARVDALQTALHHHAPSTNS---LNLKPDLNEFPKLEELQD
                  ::.*  **.**::***:**** ::    :*.         *****::*:  :
BoxShade v3.31 C (beta, 970507) Output
AT1G46768.1     M E - - - - - - - - R E Q E E S T M R K - - - R R Q P P Q E E V P N H V A T R - - - K P Y R G I R R R K W G K W V A E I
pt016489_POPTR_    M E - - G G C C T S S T S T P S S T S - - - - - - T A T T E K R K H S R Q Q N Q E - K P Y R G I R M R K W G K W V A E I
gm039398_Glyma1    M E D R D H C C S N N S T M I T T T K K R T G R R S P T S D K L K N Q H R E K Q S M K P Y R G I R M R K W G K W V A E I
 
AT1G46768.1     R E P N K R S R L W L G S Y T T D I A A A R A Y D V A V F Y L R G P S A R L N F P D L L L Q E E D H L S A A T T A - - -
pt016489_POPTR_    R E P N K R S R I W L G S Y S T P I A A A R A Y D T A V F Y L R G P S A R L N F P D L I Y Q E D E L R - - - - - - - - -
gm039398_Glyma1    R E P N K R S R I W L G S Y T T P V A A A R A Y D T A V F Y L R G P T A R L N F P E L L F Q D D D Q E G S D S V Q H G A
 
AT1G46768.1     - - D M P A A L I R E K A A E V G A R V D A L L A S A - - - A P S M A H S T P P V I K P D L N Q I P E S G D I - -
pt016489_POPTR_    - - D V S A A S I R K K A T E V G A K V D A L Q T A V - H A S P E D N S R V L L S E K P D L N K F P E N S D E E -
gm039398_Glyma1    A G N M S A D S I R R K A T Q V G A R V D A L Q T A L H H H A P S T N S - - - L N L K P D L N E F P K L E E L Q D
 
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