fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G46768.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt038369 not found in 158aa AT1G46768.1 not_1st 0.509740259 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G46768.1     MERE-----------QEESTMRKR---RQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEI
pt038369_POPTR_ MEGECYTSPSASSSTPTISSIGKRKHGRQQNQE---------KPYRGIRMRKWGKWVAEI
                ** *              *:: **   **  **         ******* **********

AT1G46768.1     REPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMP
pt038369_POPTR_ REPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSVRLNFPDLIHQEDE------LCDVS
                ********:*****:* ********.*********.*******: **::       .*:.

AT1G46768.1     AALIREKAAEVGARVDALLASAAPSMAHSTPP-----VIKPDLNQIPESGDI-
pt038369_POPTR_ AASIRKKATEVGAKVDALQTALHASPGDNSPANRLLLSEKPDLNEYPENCDEE
                ** **:**:****:**** ::  .* ...:*.       *****: **. *
BoxShade v3.31 C (beta, 970507) Output
AT1G46768.1     M E R E - - - - - - - - - - - Q E E S T M R K R - - - R Q P P Q E E V P N H V A T R K P Y R G I R R R K W G K W V A E I
pt038369_POPTR_    M E G E C Y T S P S A S S S T P T I S S I G K R K H G R Q Q N Q E - - - - - - - - - K P Y R G I R M R K W G K W V A E I
 
AT1G46768.1     R E P N K R S R L W L G S Y T T D I A A A R A Y D V A V F Y L R G P S A R L N F P D L L L Q E E D H L S A A T T A D M P
pt038369_POPTR_    R E P N K R S R I W L G S Y S T P I A A A R A Y D T A V F Y L R G P S V R L N F P D L I H Q E D E - - - - - - L C D V S
 
AT1G46768.1     A A L I R E K A A E V G A R V D A L L A S A A P S M A H S T P P - - - - - V I K P D L N Q I P E S G D I -
pt038369_POPTR_    A A S I R K K A T E V G A K V D A L Q T A L H A S P G D N S P A N R L L L S E K P D L N E Y P E N C D E E
 
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