fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G46768.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039398 not found in 174aa AT1G46768.1 1st_1st 0.509740259 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G46768.1     MERE----QEESTM-------RKRRQPPQEEVPNH---VATRKPYRGIRRRKWGKWVAEI
gm039398_Glyma1 MEDRDHCCSNNSTMITTTKKRTGRRSPTSDKLKNQHREKQSMKPYRGIRMRKWGKWVAEI
                ** .    .::***         **.*..::: *:     : ******* **********

AT1G46768.1     REPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDH-----LSAAT
gm039398_Glyma1 REPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDDQEGSDSVQHGA
                ********:******* :*******.********:******:**:*::*:     :. .:

AT1G46768.1     TADMPAALIREKAAEVGARVDALLASAAPSMAHSTPPV----IKPDLNQIPESGDI--
gm039398_Glyma1 AGNMSADSIRRKATQVGARVDAL----QTALHHHAPSTNSLNLKPDLNEFPKLEELQD
                :.:*.*  **.**::********     .:: * :*..    :*****::*:  ::
BoxShade v3.31 C (beta, 970507) Output
AT1G46768.1     M E R E - - - - Q E E S T M - - - - - - - R K R R Q P P Q E E V P N H - - - V A T R K P Y R G I R R R K W G K W V A E I
gm039398_Glyma1    M E D R D H C C S N N S T M I T T T K K R T G R R S P T S D K L K N Q H R E K Q S M K P Y R G I R M R K W G K W V A E I
 
AT1G46768.1     R E P N K R S R L W L G S Y T T D I A A A R A Y D V A V F Y L R G P S A R L N F P D L L L Q E E D H - - - - - L S A A T
gm039398_Glyma1    R E P N K R S R I W L G S Y T T P V A A A R A Y D T A V F Y L R G P T A R L N F P E L L F Q D D D Q E G S D S V Q H G A
 
AT1G46768.1     T A D M P A A L I R E K A A E V G A R V D A L L A S A A P S M A H S T P P V - - - - I K P D L N Q I P E S G D I - -
gm039398_Glyma1    A G N M S A D S I R R K A T Q V G A R V D A L - - - - Q T A L H H H A P S T N S L N L K P D L N E F P K L E E L Q D
 
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