fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G48000.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt034806 not found in 317aa AT3G06490.1 1st_not 0.581818181 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G48000.1     -MNISRTEFANCKTLINHKEEVEEVEKKMEIEIRRGPWTVEEDMKLVSYISLHGEGRWNS
pt034806_POPTR_ MMDVEGNS--------NSSSSTTQSDEEMMVDLRRGPWTVEEDFKLIDYIATHGEGRWNS
                 *::. ..        * .... : :::* :::**********:**:.**: ********

AT1G48000.1     LSRSAGLNRTGKSCRLRWLNYLRPDIRRGDISLQEQFIILELHSRWGNRWSKIAQHLPGR
pt034806_POPTR_ LARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGR
                *:*.***:*****************:***:*:*:**::**********************

AT1G48000.1     TDNEIKNYWRTRVQKHAKLLKCDVNSKQFKDTIKHLWMPRLIERI----AATQSVQFTS-
pt034806_POPTR_ TDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQAAAAATSSSTATSA
                ****************** *************:::**********    ***.*   ** 

AT1G48000.1     ------NH--------------------------------YSPENSSVATATSSTSSSEA
pt034806_POPTR_ SPAASTNHHLINNNDVGTGNLVMPHGVIGNDFGVSHVTPSYTPENSSTAASSDSFAAQVS
                      **                                *:*****.*:::.* ::. :

AT1G48000.1     VRS-----------------SFYGGDQ-----------------VEFGTLDHMTNGGYWF
pt034806_POPTR_ PVSDLTTDYYYIPVNHNPNPDYFQADQGGYSESMISPAGYFNQGLDFQAMEH--NSNQWL
                  *                 .:: .**                 ::* :::*  *.. *:

AT1G48000.1     -NGGDTFETLCSFDELNKWLIQ-------
pt034806_POPTR_ MESGDTSDNLWNPEDI--WFLQQQMNYNM
                 :.*** :.* . :::  *::*
BoxShade v3.31 C (beta, 970507) Output
AT1G48000.1     - M N I S R T E F A N C K T L I N H K E E V E E V E K K M E I E I R R G P W T V E E D M K L V S Y I S L H G E G R W N S
pt034806_POPTR_    M M D V E G N S - - - - - - - - N S S S S T T Q S D E E M M V D L R R G P W T V E E D F K L I D Y I A T H G E G R W N S
 
AT1G48000.1     L S R S A G L N R T G K S C R L R W L N Y L R P D I R R G D I S L Q E Q F I I L E L H S R W G N R W S K I A Q H L P G R
pt034806_POPTR_    L A R C A G L K R T G K S C R L R W L N Y L R P D V R R G N I T L E E Q L M I L E L H S R W G N R W S K I A Q H L P G R
 
AT1G48000.1     T D N E I K N Y W R T R V Q K H A K L L K C D V N S K Q F K D T I K H L W M P R L I E R I - - - - A A T Q S V Q F T S -
pt034806_POPTR_    T D N E I K N Y W R T R V Q K H A K Q L K C D V N S K Q F K D T M R Y L W M P R L I E R I Q A A A A A T S S S T A T S A
 
AT1G48000.1     - - - - - - N H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Y S P E N S S V A T A T S S T S S S E A
pt034806_POPTR_    S P A A S T N H H L I N N N D V G T G N L V M P H G V I G N D F G V S H V T P S Y T P E N S S T A A S S D S F A A Q V S
 
AT1G48000.1     V R S - - - - - - - - - - - - - - - - - S F Y G G D Q - - - - - - - - - - - - - - - - - V E F G T L D H M T N G G Y W F
pt034806_POPTR_    P V S D L T T D Y Y Y I P V N H N P N P D Y F Q A D Q G G Y S E S M I S P A G Y F N Q G L D F Q A M E H - - N S N Q W L
 
AT1G48000.1     - N G G D T F E T L C S F D E L N K W L I Q - - - - - - -
pt034806_POPTR_    M E S G D T S D N L W N P E D I - - W F L Q Q Q M N Y N M
 
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