fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G50640.1 NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm049039 REPLPFDLNVLPLDDAD in 188/212 AT3G20310.1 not_not 0.418879056 III
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G50640.1     MRRGRGSSAVAGPTVVAAINGS----VKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGT
gm049039_Glyma1 --MGRGGTAAAA--VEIAEPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGT
                   ***.:*.*.  *  *  **    .** *:****************** *********

AT1G50640.1     FDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPP---PPNLRFNQIRNQNQNQVDPFMD
gm049039_Glyma1 FDTAEEAARAYDTAARTLRGPKAKTNFPL---SPPFYHP----------------DPFSD
                **:*********:***.***********:   ***   *                *** *

AT1G50640.1     HRL---------FTDHQQQFPIVNRPTSSSMSSTVESFSGPR---PTTMKPATTKRYPRT
gm049039_Glyma1 HRYFDGAGAGEDFQDHR-------RPTSSGMSSTVESFSGPRAAVPAKAPVIVNRRYPRT
                **          * **:       *****.************   *:.    ..:*****

AT1G50640.1     PPVVPEDCHSDCDSSSSVID--DDDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLH
gm049039_Glyma1 PPVVPEDCRSDCDSSSSVVDDGDGDNVASSFRRE--PLPFDLNVLPLDDADV--ATDDLF
                ********:*********:*  *.*::*** **.  *: ****. *** .*:  .:***.

AT1G50640.1     CTDLRL
gm049039_Glyma1 CTVLCL
                ** * *
BoxShade v3.31 C (beta, 970507) Output
AT1G50640.1     M R R G R G S S A V A G P T V V A A I N G S - - - - V K E I R F R G V R K R P W G R F A A E I R D P W K K A R V W L G T
gm049039_Glyma1    - - M G R G G T A A A A - - V E I A E P G S R P V F F K E P R Y R G V R K R P W G R F A A E I R D P L K K A R V W L G T
 
AT1G50640.1     F D S A E E A A R A Y D S A A R N L R G P K A K T N F P I D S S S P P - - - P P N L R F N Q I R N Q N Q N Q V D P F M D
gm049039_Glyma1    F D T A E E A A R A Y D T A A R T L R G P K A K T N F P L - - - S P P F Y H P - - - - - - - - - - - - - - - - D P F S D
 
AT1G50640.1     H R L - - - - - - - - - F T D H Q Q Q F P I V N R P T S S S M S S T V E S F S G P R - - - P T T M K P A T T K R Y P R T
gm049039_Glyma1    H R Y F D G A G A G E D F Q D H R - - - - - - - R P T S S G M S S T V E S F S G P R A A V P A K A P V I V N R R Y P R T
 
AT1G50640.1     P P V V P E D C H S D C D S S S S V I D - - D D D D I A S S S R R R N P P F Q F D L N F P P L D C V D L F N G A D D L H
gm049039_Glyma1    P P V V P E D C R S D C D S S S S V V D D G D G D N V A S S F R R E - - P L P F D L N V L P L D D A D V - - A T D D L F
 
AT1G50640.1     C T D L R L
gm049039_Glyma1    C T V L C L
 
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