fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G50640.1 NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm023109 REPLPFDLNALPLDDAD in 186/210 AT1G50640.1 1st_1st 0.436578171 Ia
Pt030795 RKPLPFDLNFPPLDQVD in 194/219 AT1G50640.1 1st_1st 0.430678466 Ia
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G50640.1     MRRGRGSSA---VAGPTVVAAINGSV--KEIRFRGVRKRPWGRFAAEIRDPWKKARVWLG
gm023109_Glyma0 --MGRGGTA---AAAAEVAEPGLRPVYFKEQRYRGVRKRPWGRFAAEIRDPLKKARVWLG
pt030795_POPTR_ --MGRTRTTTKQAVDPNGSATQNMLVIAKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLG
                   **  ::   .. .    .    *  ** *:****************** **:*****

AT1G50640.1     TFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPP---PPNLRFNQIRNQNQNQVDPFM
gm023109_Glyma0 TFDTAEEAARAYDTAARTLRGPKAKTNFPL---SPPFYHP----------------DPFS
pt030795_POPTR_ TFDSAEDAARAYDAAARTLRGAKAKTNFPISTTNQLFNHQ---------NQNQSPTDPFL
                ***:**:******:***.***.*******:   .                      *** 

AT1G50640.1     DHRLFTDHQQQFPIVNRPTSSSMSSTVESFSGPR---PTTMKPATT---KRYPRTPPVVP
gm023109_Glyma0 DHRHFANTGEDFHDHRRPTSSGMSSTVESFSGPRAAVPATAPVATG---RRYPRTPPVIP
pt030795_POPTR_ DHHSINP--------QRPTSSSLSSTVESFSGPRPPQPTTTTKSGNGPRRSHPRIPPVVP
                **: :          .*****.:***********   *:*   :     : :** ***:*

AT1G50640.1     EDCHSDCDSSSSVIDD--DDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLR
gm023109_Glyma0 EDCRSDCDSSSSVVDDGEGDNVASSFPRE--PLPFDLNALPLDDADV--ATDDLFCTVLC
pt030795_POPTR_ EDCHSDCDSSSSVVDDRDVASAASSLCRK--PLPFDLNFPPLDQVDL-GSGDDLHCTALC
                ***:*********:**    . ***  *.  *: ****  *** .*:  . ***.** * 

AT1G50640.1     L
gm023109_Glyma0 L
pt030795_POPTR_ L
                *
BoxShade v3.31 C (beta, 970507) Output
AT1G50640.1     M R R G R G S S A - - - V A G P T V V A A I N G S V - - K E I R F R G V R K R P W G R F A A E I R D P W K K A R V W L G
gm023109_Glyma0    - - M G R G G T A - - - A A A A E V A E P G L R P V Y F K E Q R Y R G V R K R P W G R F A A E I R D P L K K A R V W L G
pt030795_POPTR_    - - M G R T R T T T K Q A V D P N G S A T Q N M L V I A K E P R Y R G V R K R P W G R F A A E I R D P W K K T R V W L G
 
AT1G50640.1     T F D S A E E A A R A Y D S A A R N L R G P K A K T N F P I D S S S P P - - - P P N L R F N Q I R N Q N Q N Q V D P F M
gm023109_Glyma0    T F D T A E E A A R A Y D T A A R T L R G P K A K T N F P L - - - S P P F Y H P - - - - - - - - - - - - - - - - D P F S
pt030795_POPTR_    T F D S A E D A A R A Y D A A A R T L R G A K A K T N F P I S T T N Q L F N H Q - - - - - - - - - N Q N Q S P T D P F L
 
AT1G50640.1     D H R L F T D H Q Q Q F P I V N R P T S S S M S S T V E S F S G P R - - - P T T M K P A T T - - - K R Y P R T P P V V P
gm023109_Glyma0    D H R H F A N T G E D F H D H R R P T S S G M S S T V E S F S G P R A A V P A T A P V A T G - - - R R Y P R T P P V I P
pt030795_POPTR_    D H H S I N P - - - - - - - - Q R P T S S S L S S T V E S F S G P R P P Q P T T T T K S G N G P R R S H P R I P P V V P
 
AT1G50640.1     E D C H S D C D S S S S V I D D - - D D D I A S S S R R R N P P F Q F D L N F P P L D C V D L F N G A D D L H C T D L R
gm023109_Glyma0    E D C R S D C D S S S S V V D D G E G D N V A S S F P R E - - P L P F D L N A L P L D D A D V - - A T D D L F C T V L C
pt030795_POPTR_    E D C H S D C D S S S S V V D D R D V A S A A S S L C R K - - P L P F D L N F P P L D Q V D L - G S G D D L H C T A L C
 
AT1G50640.1     L
gm023109_Glyma0    L
pt030795_POPTR_    L
 
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