fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G50640.1 NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt030795 RKPLPFDLNFPPLDQVD in 194/219 AT1G50640.1 1st_1st 0.430678466 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G50640.1     MRRGRGSSAVA-GPTVVAAINGSV--KEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTF
pt030795_POPTR_ MGRTRTTTKQAVDPNGSATQNMLVIAKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTF
                * * * ::  * .*.  *: *  *  ** *:*********************:*******

AT1G50640.1     DSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLF
pt030795_POPTR_ DSAEDAARAYDAAARTLRGAKAKTNFPISTT-----NQLFNH-QNQNQSPTDPFLDHHSI
                ****:******:***.***.********.::     *  **: :****. .***:**: :

AT1G50640.1     TDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPATTKR--------YPRTPPVVPEDC
pt030795_POPTR_ NPQ--------RPTSSSLSSTVESFSGPRPP--QPTTTTKSGNGPRRSHPRIPPVVPEDC
                . :        ******:************.  :*:**.:        :** ********

AT1G50640.1     HSDCDSSSSVIDDDDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL
pt030795_POPTR_ HSDCDSSSSVVDDRDVASAASSLCRKPLPFDLNFPPLDQVDLGSG-DDLHCTALCL
                **********:** *  :::*   . *: ********* *** .* ****** * *
BoxShade v3.31 C (beta, 970507) Output
AT1G50640.1     M R R G R G S S A V A - G P T V V A A I N G S V - - K E I R F R G V R K R P W G R F A A E I R D P W K K A R V W L G T F
pt030795_POPTR_    M G R T R T T T K Q A V D P N G S A T Q N M L V I A K E P R Y R G V R K R P W G R F A A E I R D P W K K T R V W L G T F
 
AT1G50640.1     D S A E E A A R A Y D S A A R N L R G P K A K T N F P I D S S S P P P P N L R F N Q I R N Q N Q N Q V D P F M D H R L F
pt030795_POPTR_    D S A E D A A R A Y D A A A R T L R G A K A K T N F P I S T T - - - - - N Q L F N H - Q N Q N Q S P T D P F L D H H S I
 
AT1G50640.1     T D H Q Q Q F P I V N R P T S S S M S S T V E S F S G P R P T T M K P A T T K R - - - - - - - - Y P R T P P V V P E D C
pt030795_POPTR_    N P Q - - - - - - - - R P T S S S L S S T V E S F S G P R P P - - Q P T T T T K S G N G P R R S H P R I P P V V P E D C
 
AT1G50640.1     H S D C D S S S S V I D D D D D I A S S S R R R N P P F Q F D L N F P P L D C V D L F N G A D D L H C T D L R L
pt030795_POPTR_    H S D C D S S S S V V D D R D V A S A A S S L C R K P L P F D L N F P P L D Q V D L G S G - D D L H C T A L C L
 
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