fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G50640.1 NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm038668 RPPLPFDLNALPFDDDA in 197/222 AT1G50640.1 not_1st 0.424778761 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G50640.1     MRRGRGSSAVAGPTVVAAINGSV-KEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDS
gm038668_Glyma1 MRKGRGGGASAA--AAAAVNGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDS
                **:***..* *.  ..**:**** ** *:****************** ************

AT1G50640.1     AEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLFTD
gm038668_Glyma1 AEDAARAYDTAARNLRGSKAKTNFPLSPFCYQHPT-------------TDPFF-YAGFHD
                **:******:*******.*******:.. .   *.             .***: :  * *

AT1G50640.1     HQQQFPIVN-------RPTSSSMSSTVESFSGPRP-----TTMKP--ATTKRYPRTPPVV
gm038668_Glyma1 HQNNSNNNNDNLNNPQRPTSSGMSSTVESFSGPRPPTTTTTTTTPFLTTTRRYPRTPPLV
                **::    *       *****.*************     ** .*  :**:*******:*

AT1G50640.1     PEDCHSDCDSSSSVIDD-DDDIASSSRRRNPPFQFDLNFPPLD----CVDLFNGADDLHC
gm038668_Glyma1 PEDCHSDCDSSSSVVDDSDDNIVSSSFR--PPLPFDLNALPFDDDAAVVD-----DDLRC
                **************:** **:*.*** *  **: ****  *:*     **     ***:*

AT1G50640.1     TDLRL
gm038668_Glyma1 TALCL
                * * *
BoxShade v3.31 C (beta, 970507) Output
AT1G50640.1     M R R G R G S S A V A G P T V V A A I N G S V - K E I R F R G V R K R P W G R F A A E I R D P W K K A R V W L G T F D S
gm038668_Glyma1    M R K G R G G G A S A A - - A A A A V N G S V L K E P R Y R G V R K R P W G R F A A E I R D P L K K A R V W L G T F D S
 
AT1G50640.1     A E E A A R A Y D S A A R N L R G P K A K T N F P I D S S S P P P P N L R F N Q I R N Q N Q N Q V D P F M D H R L F T D
gm038668_Glyma1    A E D A A R A Y D T A A R N L R G S K A K T N F P L S P F C Y Q H P T - - - - - - - - - - - - - T D P F F - Y A G F H D
 
AT1G50640.1     H Q Q Q F P I V N - - - - - - - R P T S S S M S S T V E S F S G P R P - - - - - T T M K P - - A T T K R Y P R T P P V V
gm038668_Glyma1    H Q N N S N N N N D N L N N P Q R P T S S G M S S T V E S F S G P R P P T T T T T T T T P F L T T T R R Y P R T P P L V
 
AT1G50640.1     P E D C H S D C D S S S S V I D D - D D D I A S S S R R R N P P F Q F D L N F P P L D - - - - C V D L F N G A D D L H C
gm038668_Glyma1    P E D C H S D C D S S S S V V D D S D D N I V S S S F R - - P P L P F D L N A L P F D D D A A V V D - - - - - D D L R C
 
AT1G50640.1     T D L R L
gm038668_Glyma1    T A L C L
 
0