fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G50640.1 NPPFQFDLNFPPLDCVD at 198/225 in AT1G50640.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm023109 REPLPFDLNALPLDDAD in 186/210 AT1G50640.1 1st_1st 0.436578171 Ia
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G50640.1     MRRGRGSSAVAGPTVVAAINGSV--KEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFD
gm023109_Glyma0 --MGRGGTAAAAAEVAEPGLRPVYFKEQRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFD
                   ***.:*.*.. *. .   .*  ** *:****************** ***********

AT1G50640.1     SAEEAARAYDSAARNLRGPKAKTNFPIDSSSPP---PPNLRFNQIRNQNQNQVDPFMDHR
gm023109_Glyma0 TAEEAARAYDTAARTLRGPKAKTNFPL---SPPFYHP----------------DPFSDHR
                :*********:***.***********:   ***   *                *** ***

AT1G50640.1     LFTDHQQQFPIVNRPTSSSMSSTVESFSGPR---PTTMKPATTKRYPRTPPVVPEDCHSD
gm023109_Glyma0 HFANTGEDFHDHRRPTSSGMSSTVESFSGPRAAVPATAPVATGRRYPRTPPVIPEDCRSD
                 *::  ::*   .*****.************   *:*   ** :********:****:**

AT1G50640.1     CDSSSSVIDD--DDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL
gm023109_Glyma0 CDSSSSVVDDGEGDNVASSFPRE--PLPFDLNALPLDDADV--ATDDLFCTVLCL
                *******:**  .*::***  *.  *: ****  *** .*:  .:***.** * *
BoxShade v3.31 C (beta, 970507) Output
AT1G50640.1     M R R G R G S S A V A G P T V V A A I N G S V - - K E I R F R G V R K R P W G R F A A E I R D P W K K A R V W L G T F D
gm023109_Glyma0    - - M G R G G T A A A A A E V A E P G L R P V Y F K E Q R Y R G V R K R P W G R F A A E I R D P L K K A R V W L G T F D
 
AT1G50640.1     S A E E A A R A Y D S A A R N L R G P K A K T N F P I D S S S P P - - - P P N L R F N Q I R N Q N Q N Q V D P F M D H R
gm023109_Glyma0    T A E E A A R A Y D T A A R T L R G P K A K T N F P L - - - S P P F Y H P - - - - - - - - - - - - - - - - D P F S D H R
 
AT1G50640.1     L F T D H Q Q Q F P I V N R P T S S S M S S T V E S F S G P R - - - P T T M K P A T T K R Y P R T P P V V P E D C H S D
gm023109_Glyma0    H F A N T G E D F H D H R R P T S S G M S S T V E S F S G P R A A V P A T A P V A T G R R Y P R T P P V I P E D C R S D
 
AT1G50640.1     C D S S S S V I D D - - D D D I A S S S R R R N P P F Q F D L N F P P L D C V D L F N G A D D L H C T D L R L
gm023109_Glyma0    C D S S S S V V D D G E G D N V A S S F P R E - - P L P F D L N A L P L D D A D V - - A T D D L F C T V L C L
 
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