fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G52830.1 ALEITELRLGLPGDNY at 11/189 in AT1G52830.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt028706 not found in 189aa AT3G15540.1 1st_not 0.536656891 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G52830.1     MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE
pt028706_POPTR_ MAQP-LGLEITELRLGPPG------SENGPKNEKKRVFSELSGEANSTTDGRKTQTT---
                **:  *.********* **      *  *..::****:*::  .:   *:..:: .:   

AT1G52830.1     DESLPVVKSQAVGWPPVCSYRRK-----KNNEEASKAIGYVKVSMDGVPYMRKIDLGSSN
pt028706_POPTR_ --------SQVVGWPPVCSYRKKNSFNEKDSHETSKI--YVKVSMDGAPFLRKVDLGMHK
                        **.**********:*     *:..*:**   ********.*::**:***  :

AT1G52830.1     SYINLVTVLENLFGCLGIGVA-KEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLR
pt028706_POPTR_ EYSDLVVALEKLFGCFGIGKALKDTDDCEYVPIYEDKDGDWMLVGDVPWEMFIESCKRLR
                .* :**..**:****:*** * *: ..***: ****** **********:** *******

AT1G52830.1     IVKRSDATGFGLQ-----------QD---
pt028706_POPTR_ IMKRSEAKGFGLQPRGALQQGNISKDDRD
                *:***:*.*****           :*
BoxShade v3.31 C (beta, 970507) Output
AT1G52830.1     M A K E G L A L E I T E L R L G L P G D N Y S E I S V C G S S K K K K R V L S D M M T S S A L D T E N E N S V V S S V E
pt028706_POPTR_    M A Q P - L G L E I T E L R L G P P G - - - - - - S E N G P K N E K K R V F S E L S G E A N S T T D G R K T Q T T - - -
 
AT1G52830.1     D E S L P V V K S Q A V G W P P V C S Y R R K - - - - - K N N E E A S K A I G Y V K V S M D G V P Y M R K I D L G S S N
pt028706_POPTR_    - - - - - - - - S Q V V G W P P V C S Y R K K N S F N E K D S H E T S K I - - Y V K V S M D G A P F L R K V D L G M H K
 
AT1G52830.1     S Y I N L V T V L E N L F G C L G I G V A - K E G K K C E Y I I I Y E D K D R D W M L V G D V P W Q M F K E S C K R L R
pt028706_POPTR_    E Y S D L V V A L E K L F G C F G I G K A L K D T D D C E Y V P I Y E D K D G D W M L V G D V P W E M F I E S C K R L R
 
AT1G52830.1     I V K R S D A T G F G L Q - - - - - - - - - - - Q D - - -
pt028706_POPTR_    I M K R S E A K G F G L Q P R G A L Q Q G N I S K D D R D
 
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