fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G52830.1 ALEITELRLGLPGDNY at 11/189 in AT1G52830.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt010911 GLEITELRLGLPGSDD in 11/184 AT3G15540.1 not_not 0.510263929 III
Pt001236 NLEATELRLGLPGTAT in 13/201 AT5G43700.1 not_not 0.401759530 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G52830.1     M-AKEGLALEITELRLGLPGDNYSEISV----CGSSKKKKRVLSDMMTSSALDTENENSV
pt010911_POPTR_ --MAQPLGLEITELRLGLPGS-----------DDGHKNDKKRV--FSEVSG-----EANS
pt001236_POPTR_ MEFERDLNLEATELRLGLPGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAG--RRESSS
                    . * ** *********             .  *..*: :  :   *.     * . 

AT1G52830.1     VSSVEDESL-----PVVKSQAVGWPPVCSYRRK------KNNEEASKAIGYVKVSMDGVP
pt010911_POPTR_ -TTDDRKVQ-------TKSQVVGWPPVCSYRKNISFNERDRHHETSKI--YVKVSMDGAP
pt001236_POPTR_ VSSNDKKSHEQETAPPTKTQVVGWPPIRSYRKN-CLQARKLEAEAAGL--YVKVSMDGAP
                 :: : :         .*:*.*****: ***::      . . *::    ********.*

AT1G52830.1     YMRKIDLGSSNSYINLVTVLENLFGCLGIGVAKEGKK---CEYIIIYEDKDRDWMLVGDV
pt010911_POPTR_ FLRKIDLGMHKEYSDLVVALERLFGCYGIGKALK------DEYVPIYEDKDGDWMLVGDV
pt001236_POPTR_ YLRKIDLKVYKGYPELLEVVEEMFK-FKVGEYSEREGYNGSEYVPTYEDKDGDWMLVGDV
                ::*****   : * :*: .:*.:*    :*   :       **:  ***** ********

AT1G52830.1     PWQMFKESCKRLRIVKRSDATGFGLQQ---------D---
pt010911_POPTR_ PWEMFFESCKRLRIMKSSEAKGFGLQPRGALKGISKDERH
pt001236_POPTR_ PWEMFINSCKRLRIMKESEARGLGCAV-------------
                **:** :*******:* *:* *:*
BoxShade v3.31 C (beta, 970507) Output
AT1G52830.1     M - A K E G L A L E I T E L R L G L P G D N Y S E I S V - - - - C G S S K K K K R V L S D M M T S S A L D T E N E N S V
pt010911_POPTR_    - - M A Q P L G L E I T E L R L G L P G S - - - - - - - - - - - D D G H K N D K K R V - - F S E V S G - - - - - E A N S
pt001236_POPTR_    M E F E R D L N L E A T E L R L G L P G T A T E Q L E K Q T P N S N V T K S N K R S L P D M N E D S A G - - R R E S S S
 
AT1G52830.1     V S S V E D E S L - - - - - P V V K S Q A V G W P P V C S Y R R K - - - - - - K N N E E A S K A I G Y V K V S M D G V P
pt010911_POPTR_    - T T D D R K V Q - - - - - - - T K S Q V V G W P P V C S Y R K N I S F N E R D R H H E T S K I - - Y V K V S M D G A P
pt001236_POPTR_    V S S N D K K S H E Q E T A P P T K T Q V V G W P P I R S Y R K N - C L Q A R K L E A E A A G L - - Y V K V S M D G A P
 
AT1G52830.1     Y M R K I D L G S S N S Y I N L V T V L E N L F G C L G I G V A K E G K K - - - C E Y I I I Y E D K D R D W M L V G D V
pt010911_POPTR_    F L R K I D L G M H K E Y S D L V V A L E R L F G C Y G I G K A L K - - - - - - D E Y V P I Y E D K D G D W M L V G D V
pt001236_POPTR_    Y L R K I D L K V Y K G Y P E L L E V V E E M F K - F K V G E Y S E R E G Y N G S E Y V P T Y E D K D G D W M L V G D V
 
AT1G52830.1     P W Q M F K E S C K R L R I V K R S D A T G F G L Q Q - - - - - - - - - D - - -
pt010911_POPTR_    P W E M F F E S C K R L R I M K S S E A K G F G L Q P R G A L K G I S K D E R H
pt001236_POPTR_    P W E M F I N S C K R L R I M K E S E A R G L G C A V - - - - - - - - - - - - -
 
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