fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G52830.1 ALEITELRLGLPGDNY at 11/189 in AT1G52830.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022022 GLEITELRLGLPDAEH in 12/195 AT3G15540.1 1st_not 0.551319648 II
HKGYSDLALALDKLFG in 112/195
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G52830.1     MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE
gm022022_Glyma0 MAKEGLGLEITELRLGLP-DAEHQVSVVNKKNEKKRAFSEI--DDGVGDENSS---SGGG
                ******.*********** *   ::** ...::***.:*::  ...:. **..   *.  

AT1G52830.1     DESLPVVKSQAVGWPPVCSYRRKKN-NEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYIN
gm022022_Glyma0 DRKMETNKSQVVGWPPVCSYRKKNSMNEGASKM--YVKVSMDGAPFLRKIDLGLHKGYSD
                *..: . ***.**********:*:. ** ***   ********.*::******  :.* :

AT1G52830.1     LVTVLENLFGCLGIGVA-KEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKR
gm022022_Glyma0 LALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKK
                *. .*::**** *:  * *:..:.*:: ****** **********:** ********:*:

AT1G52830.1     SDATGFGLQQD------------
gm022022_Glyma0 SDAKGFGLQPKGSLKGFIESAAK
                ***.***** .
BoxShade v3.31 C (beta, 970507) Output
AT1G52830.1     M A K E G L A L E I T E L R L G L P G D N Y S E I S V C G S S K K K K R V L S D M M T S S A L D T E N E N S V V S S V E
gm022022_Glyma0    M A K E G L G L E I T E L R L G L P - D A E H Q V S V V N K K N E K K R A F S E I - - D D G V G D E N S S - - - S G G G
 
AT1G52830.1     D E S L P V V K S Q A V G W P P V C S Y R R K K N - N E E A S K A I G Y V K V S M D G V P Y M R K I D L G S S N S Y I N
gm022022_Glyma0    D R K M E T N K S Q V V G W P P V C S Y R K K N S M N E G A S K M - - Y V K V S M D G A P F L R K I D L G L H K G Y S D
 
AT1G52830.1     L V T V L E N L F G C L G I G V A - K E G K K C E Y I I I Y E D K D R D W M L V G D V P W Q M F K E S C K R L R I V K R
gm022022_Glyma0    L A L A L D K L F G C Y G M V E A L K N A D N S E H V P I Y E D K D G D W M L V G D V P W E M F M E S C K R L R I M K K
 
AT1G52830.1     S D A T G F G L Q Q D - - - - - - - - - - - -
gm022022_Glyma0    S D A K G F G L Q P K G S L K G F I E S A A K
 
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