fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G52880.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt031841 not found in 360aa AT3G15510.1 1st_not 0.576374745 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G52880.1     MESTDSS-----------GGPPPPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAII
pt031841_POPTR_ MERTDSSTGGAGGGGGGGGGRGSQQPNLPPGFRFHPTDEELVVHYLKKKTTSAPLPVAII
                ** ****           **  . ******************:****:*: *.*******

AT1G52880.1     ADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIS
pt031841_POPTR_ AEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLS
                *:***************:****************************************:*

AT1G52880.1     TGGGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEYRLTDNKPTHI---CDFGNKKNSLRL
pt031841_POPTR_ S--GGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLADNKVNNKPPGCDLGNKKNSLRL
                :  **::***********.******:*::********:*** .:    **:*********

AT1G52880.1     DDWVLCRIYKKNNSTASRHHHHLHHIHLDNDHHRHDMMIDDDRFRHVPP-----------
pt031841_POPTR_ DDWVLCRIYKKNNTQRPM------------DHDKDDSM--DDVLGSIPPSISVGSHQNGT
                *************:  .             **.:.* *  ** :  :**           

AT1G52880.1     -----GLHFPAIFSDNNDPTAIYDG---GGGGYGGGSYSMNHCFASGSKQEQL-FPPVMM
pt031841_POPTR_ LHLAKGTNFGALLDNDHN---LFEGIISSSDGIRSSSSSLSHMASSVTKRDLLMLPPKRT
                     * :* *::.::::   :::*   ...*  ..* *:.*  :* :*:: * :**   

AT1G52880.1     MTSL--NQDSGIGSSSSPSKRFNGGGVG-------DCSTSMAA-------TPLMQNQ---
pt031841_POPTR_ LPSLYWTGEDMVGPSS--SKRFQGGINGDEIVVRTDGNSSVATLLGELPQTPQLHQQTML
                :.**  . :. :*.**  ****:**  *       * .:*:*:       ** :::*   

AT1G52880.1     ----GGI----YQLPGLNWYS
pt031841_POPTR_ GSMADGIFRSPYQIPSMNWYS
                    .**    **:*.:****
BoxShade v3.31 C (beta, 970507) Output
AT1G52880.1     M E S T D S S - - - - - - - - - - - G G P P P P Q P N L P P G F R F H P T D E E L V I H Y L K R K A D S V P L P V A I I
pt031841_POPTR_    M E R T D S S T G G A G G G G G G G G G R G S Q Q P N L P P G F R F H P T D E E L V V H Y L K K K T T S A P L P V A I I
 
AT1G52880.1     A D V D L Y K F D P W E L P A K A S F G E Q E W Y F F S P R D R K Y P N G A R P N R A A T S G Y W K A T G T D K P V I S
pt031841_POPTR_    A E V D L Y K F D P W E L P A K A T F G E Q E W Y F F S P R D R K Y P N G A R P N R A A T S G Y W K A T G T D K P V L S
 
AT1G52880.1     T G G G G S K K V G V K K A L V F Y S G K P P K G V K S D W I M H E Y R L T D N K P T H I - - - C D F G N K K N S L R L
pt031841_POPTR_    S - - G G T Q K V G V K K A L V F Y G G K P P K G I K T N W I M H E Y R L A D N K V N N K P P G C D L G N K K N S L R L
 
AT1G52880.1     D D W V L C R I Y K K N N S T A S R H H H H L H H I H L D N D H H R H D M M I D D D R F R H V P P - - - - - - - - - - -
pt031841_POPTR_    D D W V L C R I Y K K N N T Q R P M - - - - - - - - - - - - D H D K D D S M - - D D V L G S I P P S I S V G S H Q N G T
 
AT1G52880.1     - - - - - G L H F P A I F S D N N D P T A I Y D G - - - G G G G Y G G G S Y S M N H C F A S G S K Q E Q L - F P P V M M
pt031841_POPTR_    L H L A K G T N F G A L L D N D H N - - - L F E G I I S S S D G I R S S S S S L S H M A S S V T K R D L L M L P P K R T
 
AT1G52880.1     M T S L - - N Q D S G I G S S S S P S K R F N G G G V G - - - - - - - D C S T S M A A - - - - - - - T P L M Q N Q - - -
pt031841_POPTR_    L P S L Y W T G E D M V G P S S - - S K R F Q G G I N G D E I V V R T D G N S S V A T L L G E L P Q T P Q L H Q Q T M L
 
AT1G52880.1     - - - - G G I - - - - Y Q L P G L N W Y S
pt031841_POPTR_    G S M A D G I F R S P Y Q I P S M N W Y S
 
0