fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G52890.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm034443 not found in 345aa AT3G15500.1 1st_not 0.534055727 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G52890.1     MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP
gm034443_Glyma1 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLP
                **: *.***:*****************:*******.**:.*** :***************

AT1G52890.1     NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY
gm034443_Glyma1 SKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFY
                .**:****************************************:***::**********

AT1G52890.1     IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQKQVYDNGIANARE
gm034443_Glyma1 IGKAPKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIYKKNSSAQKAV-QNGVVPSNE
                *******************::.**:* .**************:***** * :**:. :.*

AT1G52890.1     FSNNGTSSTTSSSSHFEDVLDSFHQEIDNRNFQFSNPNRISSLRPDLTEQKTGFHGLADT
gm034443_Glyma1 HTQYSNGSSSSSSSQLDDVLESL-PAIDERCFPMP---RVNTLQQQQHEEKVNVQNLGEG
                .:: ...*::****:::***:*:   **:* * :.   *:.:*: :  *:*...:.*.: 

AT1G52890.1     SNFDWAS----------FAGNVEHNNSVPE--LGMSHVVPNLEYN-CGYL----------
gm034443_Glyma1 GLLDWTNPSVLNSVVDFVSGNNNHNQLVQDQTQGM------VNYNACNDLYVPTLCHVGT
                . :**:.          .:** :**: * :   **      ::** *. *          

AT1G52890.1     ----KTEEEVES------------------SHGFNNSGELAQKGYGVDS--FGYSGQVGG
gm034443_Glyma1 SVPQKMEEEVQSGVRNQRVQNNSWFLQNDFTQGFQNS---------VDTSGFKYPVQPVG
                    * ****:*                  ::**:**         **:  * *. *  *

AT1G52890.1     FGFM-
gm034443_Glyma1 FGFRN
                ***
BoxShade v3.31 C (beta, 970507) Output
AT1G52890.1     M G I Q E T D P L T Q L S L P P G F R F Y P T D E E L M V Q Y L C R K A A G Y D F S L Q L I A E I D L Y K F D P W V L P
gm034443_Glyma1    M G V P E K D P L S Q L S L P P G F R F Y P T D E E L L V Q Y L C R K V A G H H F S L P I I A E I D L Y K F D P W V L P
 
AT1G52890.1     N K A L F G E K E W Y F F S P R D R K Y P N G S R P N R V A G S G Y W K A T G T D K I I S T E G Q R V G I K K A L V F Y
gm034443_Glyma1    S K A I F G E K E W Y F F S P R D R K Y P N G S R P N R V A G S G Y W K A T G T D K I I T T E G R K V G I K K A L V F Y
 
AT1G52890.1     I G K A P K G T K T N W I M H E Y R L I E P S R R N G S T K L D D W V L C R I Y K K Q S S A Q K Q V Y D N G I A N A R E
gm034443_Glyma1    I G K A P K G T K T N W I M H E Y R L L D S S R K N T G T K L D D W V L C R I Y K K N S S A Q K A V - Q N G V V P S N E
 
AT1G52890.1     F S N N G T S S T T S S S S H F E D V L D S F H Q E I D N R N F Q F S N P N R I S S L R P D L T E Q K T G F H G L A D T
gm034443_Glyma1    H T Q Y S N G S S S S S S S Q L D D V L E S L - P A I D E R C F P M P - - - R V N T L Q Q Q Q H E E K V N V Q N L G E G
 
AT1G52890.1     S N F D W A S - - - - - - - - - - F A G N V E H N N S V P E - - L G M S H V V P N L E Y N - C G Y L - - - - - - - - - -
gm034443_Glyma1    G L L D W T N P S V L N S V V D F V S G N N N H N Q L V Q D Q T Q G M - - - - - - V N Y N A C N D L Y V P T L C H V G T
 
AT1G52890.1     - - - - K T E E E V E S - - - - - - - - - - - - - - - - - - S H G F N N S G E L A Q K G Y G V D S - - F G Y S G Q V G G
gm034443_Glyma1    S V P Q K M E E E V Q S G V R N Q R V Q N N S W F L Q N D F T Q G F Q N S - - - - - - - - - V D T S G F K Y P V Q P V G
 
AT1G52890.1     F G F M -
gm034443_Glyma1    F G F R N
 
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