fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G59530.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016336 not found in 144aa AT1G59530.1 1st_1st 0.319702602 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G59530.1     MFYTNMETVH--NCFNDATITGDEIIDILAFLQ---SDESDNPSGINEVV-PVDDKKRRR
pt016336_POPTR_ MFFAQ-EAVQFEHPVHGPGFTANEIQELLSLLQPPSPTEISGSRGSNQAVYSIDERKRRR
                **::: *:*:  : .:.. :*.:** ::*::**   . * ... * *:.* .:*::****

AT1G59530.1     TISNRESAKRSRMKKKKRFEELTEEVNRLNIRNQELKNRLANVVSCGNFISRENNRLKTE
pt016336_POPTR_ MVSNRESARRSRWRKKKHLEDLTQQLNRLKIQNRELQNRLGSIINQSHVLWRENGRLMSE
                 :******:*** :***::*:**:::***:*:*:**:***..::. .:.: ***.** :*

AT1G59530.1     SVCLEIRLLELYRFLVAMQSPISTSVNYITTLEI
pt016336_POPTR_ SVALKARLSDLRLVLAAMNAMQQAQ---------
                **.*: ** :*  .*.**::  .:.
BoxShade v3.31 C (beta, 970507) Output
AT1G59530.1     M F Y T N M E T V H - - N C F N D A T I T G D E I I D I L A F L Q - - - S D E S D N P S G I N E V V - P V D D K K R R R
pt016336_POPTR_    M F F A Q - E A V Q F E H P V H G P G F T A N E I Q E L L S L L Q P P S P T E I S G S R G S N Q A V Y S I D E R K R R R
 
AT1G59530.1     T I S N R E S A K R S R M K K K K R F E E L T E E V N R L N I R N Q E L K N R L A N V V S C G N F I S R E N N R L K T E
pt016336_POPTR_    M V S N R E S A R R S R W R K K K H L E D L T Q Q L N R L K I Q N R E L Q N R L G S I I N Q S H V L W R E N G R L M S E
 
AT1G59530.1     S V C L E I R L L E L Y R F L V A M Q S P I S T S V N Y I T T L E I
pt016336_POPTR_    S V A L K A R L S D L R L V L A A M N A M Q Q A Q - - - - - - - - -
 
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