fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G66140.1 DYKPISLNLSLSFNNN at 34/260 in AT1G66140.1
ESSLPDLTLKL at 254/260 in AT1G66140.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004336 SAETVSLDLKLCFNDD in 38/235 AT1G66140.1 not_1st 0.410526315 II
DDSAPDLTLKL in 230/235
Pt004335 GSETVSLDLKLCFNDD in 61/258 AT1G66140.1 not_1st 0.410526315 II
DDSAPDLTLKL in 253/258
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G66140.1     MRPILDLEIEASS---GSSSSQVASNLS-------PVGEDY----------------KPI
pt004336_POPTR_ MKPIIDLEVEASSENVSDVSSQVASNLSNQETSA-----------------------ETV
pt004335_POPTR_ MKPIIDLEVEASSENVSDVSSQVASNLSNQETSAGPSNESLTNSSYLKNAIATQSGSETV
                *:**:***:****   .. *********                             :.:

AT1G66140.1     SLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKF
pt004336_POPTR_ SLDLKLCFNDDELGGRD----SMGLSLSSTSESSNDPASRTTAEAIP-RVFSCNYCQRKF
pt004335_POPTR_ SLDLKLCFNDDELGGRD----SMGLSLSSTSESSNDPASRTTAEAIP-RVFSCNYCQRKF
                **:*.*.**::: .. *    *: *.*********   .:    ::. ************

AT1G66140.1     YSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGN
pt004336_POPTR_ FSSQALGGHQNAHKRERTLAKRAIRM---GIFSER-----------YASLASLPLHGS--
pt004335_POPTR_ FSSQALGGHQNAHKRERTLAKRAIRM---GIFSER-----------YASLASLPLHGS--
                :**********************:**   *:*. *            *:*:.******  

AT1G66140.1     GNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQGYFGNCIPFYVEDDEAEMLWP
pt004336_POPTR_ ----SFRSLGIKAHSSVHQSFAQPVRPQD-ISSSARFDHGYVG--LPIFMEDEEAELVWP
pt004335_POPTR_ ----SFRSLGIKAHSSVHQSFAQPVRPQD-ISSSARFDHGYVG--LPIFMEDEEAELVWP
                    ***:***:****.*:       *:  * . ***::**.*  :*:::**:***::**

AT1G66140.1     GSFRQATNAVAVEAGNDNLGER--KMDFLDVKQAMDMESSLPDLTLKL
pt004336_POPTR_ GSFRQV--AVADDAHQSFVLARSSNMNFLGATPSVNSDDSAPDLTLKL
pt004335_POPTR_ GSFRQV--AVADDAHQSFVLARSSNMNFLGATPSVNSDDSAPDLTLKL
                *****.  *** :* :. :  *  :*:**... ::: :.* *******
BoxShade v3.31 C (beta, 970507) Output
AT1G66140.1     M R P I L D L E I E A S S - - - G S S S S Q V A S N L S - - - - - - - P V G E D Y - - - - - - - - - - - - - - - - K P I
pt004336_POPTR_    M K P I I D L E V E A S S E N V S D V S S Q V A S N L S N Q E T S A - - - - - - - - - - - - - - - - - - - - - - - E T V
pt004335_POPTR_    M K P I I D L E V E A S S E N V S D V S S Q V A S N L S N Q E T S A G P S N E S L T N S S Y L K N A I A T Q S G S E T V
 
AT1G66140.1     S L N L S L S F N N N N N N N L D L E S S S L T L P L S S T S E S S N P E Q Q Q Q Q Q P S V S K R V F S C N Y C Q R K F
pt004336_POPTR_    S L D L K L C F N D D E L G G R D - - - - S M G L S L S S T S E S S N D P A S R T T A E A I P - R V F S C N Y C Q R K F
pt004335_POPTR_    S L D L K L C F N D D E L G G R D - - - - S M G L S L S S T S E S S N D P A S R T T A E A I P - R V F S C N Y C Q R K F
 
AT1G66140.1     Y S S Q A L G G H Q N A H K R E R T L A K R A M R M G L A G V F P G R G S S S N Y A A A A T A A A L S C L P L H G S G N
pt004336_POPTR_    F S S Q A L G G H Q N A H K R E R T L A K R A I R M - - - G I F S E R - - - - - - - - - - - Y A S L A S L P L H G S - -
pt004335_POPTR_    F S S Q A L G G H Q N A H K R E R T L A K R A I R M - - - G I F S E R - - - - - - - - - - - Y A S L A S L P L H G S - -
 
AT1G66140.1     G N M T S F R T L G I R A H S S A H D V S M T R Q T P E T L I R N I A R F N Q G Y F G N C I P F Y V E D D E A E M L W P
pt004336_POPTR_    - - - - S F R S L G I K A H S S V H Q S F A Q P V R P Q D - I S S S A R F D H G Y V G - - L P I F M E D E E A E L V W P
pt004335_POPTR_    - - - - S F R S L G I K A H S S V H Q S F A Q P V R P Q D - I S S S A R F D H G Y V G - - L P I F M E D E E A E L V W P
 
AT1G66140.1     G S F R Q A T N A V A V E A G N D N L G E R - - K M D F L D V K Q A M D M E S S L P D L T L K L
pt004336_POPTR_    G S F R Q V - - A V A D D A H Q S F V L A R S S N M N F L G A T P S V N S D D S A P D L T L K L
pt004335_POPTR_    G S F R Q V - - A V A D D A H Q S F V L A R S S N M N F L G A T P S V N S D D S A P D L T L K L
 
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