fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G66140.1 DYKPISLNLSLSFNNN at 34/260 in AT1G66140.1
ESSLPDLTLKL at 254/260 in AT1G66140.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt020469 GSEMVSLDLTLCFNND in 61/258 AT1G66140.1 1st_1st 0.415789473 Ia
DDSAPDLTLKL in 253/258
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G66140.1     MRPILDLEIEASS---GSSSSQVASNLSPVGEDYKP-----------------------I
pt020469_POPTR_ MKPIIDLEVEATSENVSEVSSQVASNLSNQETSAAPSNDSLTNYSYLTNAIATQSGSEMV
                *:**:***:**:*   .. *********    .  *                       :

AT1G66140.1     SLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKF
pt020469_POPTR_ SLDLTLCFNNDELGGRD----PVGLSLSSTSESSN-EPASRTTAEAIPRVFSCNYCQRKF
                **:*:*.***:: .. *    .: *.********* *  .:  ...  ************

AT1G66140.1     YSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGN
pt020469_POPTR_ FSSQALGGHQNAHKRERTLAKRAIRM---GIFSER-----------YASLASLPLHGS--
                :**********************:**   *:*. *            *:*:.******  

AT1G66140.1     GNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNI-----ARFNQGYFGNCIPFYVEDDEA
pt020469_POPTR_ ----SFRSLGIEAHSSVH------QNFAPPVRSLEISSSARFDQGYAG--LPVFMEDDEA
                    ***:***.****.*      *.  . :*.:     ***:*** *  :*.::*****

AT1G66140.1     EMLWPGSFRQATNAVA-------VEAGNDNLGERKMDFLDVKQAMDMESSLPDLTLKL
pt020469_POPTR_ ELLWPGSFRQV--AVADDAHQSFVVAGSSN-----MIFLGATPPVNLDDSAPDLTLKL
                *:********.  ***       * **..*     * **... .::::.* *******
BoxShade v3.31 C (beta, 970507) Output
AT1G66140.1     M R P I L D L E I E A S S - - - G S S S S Q V A S N L S P V G E D Y K P - - - - - - - - - - - - - - - - - - - - - - - I
pt020469_POPTR_    M K P I I D L E V E A T S E N V S E V S S Q V A S N L S N Q E T S A A P S N D S L T N Y S Y L T N A I A T Q S G S E M V
 
AT1G66140.1     S L N L S L S F N N N N N N N L D L E S S S L T L P L S S T S E S S N P E Q Q Q Q Q Q P S V S K R V F S C N Y C Q R K F
pt020469_POPTR_    S L D L T L C F N N D E L G G R D - - - - P V G L S L S S T S E S S N - E P A S R T T A E A I P R V F S C N Y C Q R K F
 
AT1G66140.1     Y S S Q A L G G H Q N A H K R E R T L A K R A M R M G L A G V F P G R G S S S N Y A A A A T A A A L S C L P L H G S G N
pt020469_POPTR_    F S S Q A L G G H Q N A H K R E R T L A K R A I R M - - - G I F S E R - - - - - - - - - - - Y A S L A S L P L H G S - -
 
AT1G66140.1     G N M T S F R T L G I R A H S S A H D V S M T R Q T P E T L I R N I - - - - - A R F N Q G Y F G N C I P F Y V E D D E A
pt020469_POPTR_    - - - - S F R S L G I E A H S S V H - - - - - - Q N F A P P V R S L E I S S S A R F D Q G Y A G - - L P V F M E D D E A
 
AT1G66140.1     E M L W P G S F R Q A T N A V A - - - - - - - V E A G N D N L G E R K M D F L D V K Q A M D M E S S L P D L T L K L
pt020469_POPTR_    E L L W P G S F R Q V - - A V A D D A H Q S F V V A G S S N - - - - - M I F L G A T P P V N L D D S A P D L T L K L
 
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