fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G66140.1 DYKPISLNLSLSFNNN at 34/260 in AT1G66140.1
ESSLPDLTLKL at 254/260 in AT1G66140.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm004974 NSDAISLDLSLNFKNS in 61/257 AT1G66140.1 not_1st 0.431578947 II
DNSTPDLTLKL in 252/257
Gm040511 NSDAISLDLSLNFKNS in 61/257 AT1G66140.1 not_1st 0.426315789 II
ENSTPDLTLKL in 252/257
Gm040510 NSDAISLDLSLNFKNS in 61/257 AT1G66140.1 not_1st 0.426315789 II
ENSTPDLTLKL in 252/257
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G66140.1     MRPILDLEIEASS---GSSSSQVASNLS---------------------PVG--EDYKPI
gm040511_Glyma1 MKPNFDLEVEACAEYESEVSSQVASNVSIQETSIGPCSDSLTNISNITNPIGIHPNSDAI
gm040510_Glyma1 MKPNFDLEVEACAEYESEVSSQVASNVSIQETSIGPCSDSLTNISNITNPIGIHPNSDAI
gm004974_Glyma0 MKPNFDLEVEACAAYESEVSSQVASNVSIQETSIGPCSDSLTNISNITNPIGIHPNSDAI
                *:* :***:**.:   .. *******:*                     *:*   : ..*

AT1G66140.1     SLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKF
gm040511_Glyma1 SLDLSLNFKNSEPGGRD----SIGFSFSSTSESSN-EPASQTTAATIPRVFSCNYCQRKF
gm040510_Glyma1 SLDLSLNFKNSEPGGRD----SIGFSFSSTSESSN-EPASQTTAATIPRVFSCNYCQRKF
gm004974_Glyma0 SLDLSLNFKNSAPGGRD----SIGFSFSSTSESSN-EPASQTTAATIPRVFSCNYCQRKF
                **:***.*:*.  .. *    *: :.:******** *  .*  .:.  ************

AT1G66140.1     YSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGN
gm040511_Glyma1 FSSQALGGHQNAHKRERTLAKRAMRMGFF--------SERY------ANLASLPLHG---
gm040510_Glyma1 FSSQALGGHQNAHKRERTLAKRAMRMGFF--------SERY------ANLASLPLHG---
gm004974_Glyma0 FSSQALGGHQNAHKRERTLAKRAMRMGFF--------SERY------ANLASLPLHG---
                :**************************:         *..*      * *:.*****   

AT1G66140.1     GNMTSFRTLGIRAHSSAHD-VSMTRQTPETLIRNIARFNQGYFGNCIPFYVEDDEAEMLW
gm040511_Glyma1 ----SFRSLGIKAHSSLHHGFLPTMRPPE--IKSNARYDQGYLGH--PIFLEDDESDLLW
gm040510_Glyma1 ----SFRSLGIKAHSSLHHGFLPTMRPPE--IKSNARYDQGYLGH--PIFLEDDESDLLW
gm004974_Glyma0 ----SFRSLGIKAHSSLHHGFSPTMRRPE--IKNNARFDQGYVGH--PIFLEDDESDLLW
                    ***:***:**** *. .  * : **  *:. **::***.*:  *:::****:::**

AT1G66140.1     PGSFRQATNAVAVEAGNDN-----LGERKMDFLDVKQAMDMESSLPDLTLKL
gm040511_Glyma1 PGSFRQVA-----EAGDSHQNFILTGSSNMSFTEVNPPVDIENSTPDLTLKL
gm040510_Glyma1 PGSFRQVA-----EAGDSHQNFILTGSSNMSFTEVNPPVDIENSTPDLTLKL
gm004974_Glyma0 PGSFRQVA-----EAGDSHQNFILTGSSNLSFTEVNPPVDIDNSTPDLTLKL
                ******.:     ***:.:      *. ::.* :*: .:*::.* *******
BoxShade v3.31 C (beta, 970507) Output
AT1G66140.1     M R P I L D L E I E A S S - - - G S S S S Q V A S N L S - - - - - - - - - - - - - - - - - - - - - P V G - - E D Y K P I
gm040511_Glyma1    M K P N F D L E V E A C A E Y E S E V S S Q V A S N V S I Q E T S I G P C S D S L T N I S N I T N P I G I H P N S D A I
gm040510_Glyma1    M K P N F D L E V E A C A E Y E S E V S S Q V A S N V S I Q E T S I G P C S D S L T N I S N I T N P I G I H P N S D A I
gm004974_Glyma0    M K P N F D L E V E A C A A Y E S E V S S Q V A S N V S I Q E T S I G P C S D S L T N I S N I T N P I G I H P N S D A I
 
AT1G66140.1     S L N L S L S F N N N N N N N L D L E S S S L T L P L S S T S E S S N P E Q Q Q Q Q Q P S V S K R V F S C N Y C Q R K F
gm040511_Glyma1    S L D L S L N F K N S E P G G R D - - - - S I G F S F S S T S E S S N - E P A S Q T T A A T I P R V F S C N Y C Q R K F
gm040510_Glyma1    S L D L S L N F K N S E P G G R D - - - - S I G F S F S S T S E S S N - E P A S Q T T A A T I P R V F S C N Y C Q R K F
gm004974_Glyma0    S L D L S L N F K N S A P G G R D - - - - S I G F S F S S T S E S S N - E P A S Q T T A A T I P R V F S C N Y C Q R K F
 
AT1G66140.1     Y S S Q A L G G H Q N A H K R E R T L A K R A M R M G L A G V F P G R G S S S N Y A A A A T A A A L S C L P L H G S G N
gm040511_Glyma1    F S S Q A L G G H Q N A H K R E R T L A K R A M R M G F F - - - - - - - - S E R Y - - - - - - A N L A S L P L H G - - -
gm040510_Glyma1    F S S Q A L G G H Q N A H K R E R T L A K R A M R M G F F - - - - - - - - S E R Y - - - - - - A N L A S L P L H G - - -
gm004974_Glyma0    F S S Q A L G G H Q N A H K R E R T L A K R A M R M G F F - - - - - - - - S E R Y - - - - - - A N L A S L P L H G - - -
 
AT1G66140.1     G N M T S F R T L G I R A H S S A H D - V S M T R Q T P E T L I R N I A R F N Q G Y F G N C I P F Y V E D D E A E M L W
gm040511_Glyma1    - - - - S F R S L G I K A H S S L H H G F L P T M R P P E - - I K S N A R Y D Q G Y L G H - - P I F L E D D E S D L L W
gm040510_Glyma1    - - - - S F R S L G I K A H S S L H H G F L P T M R P P E - - I K S N A R Y D Q G Y L G H - - P I F L E D D E S D L L W
gm004974_Glyma0    - - - - S F R S L G I K A H S S L H H G F S P T M R R P E - - I K N N A R F D Q G Y V G H - - P I F L E D D E S D L L W
 
AT1G66140.1     P G S F R Q A T N A V A V E A G N D N - - - - - L G E R K M D F L D V K Q A M D M E S S L P D L T L K L
gm040511_Glyma1    P G S F R Q V A - - - - - E A G D S H Q N F I L T G S S N M S F T E V N P P V D I E N S T P D L T L K L
gm040510_Glyma1    P G S F R Q V A - - - - - E A G D S H Q N F I L T G S S N M S F T E V N P P V D I E N S T P D L T L K L
gm004974_Glyma0    P G S F R Q V A - - - - - E A G D S H Q N F I L T G S S N L S F T E V N P P V D I D N S T P D L T L K L
 
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