fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G66380.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050409 not found in 220aa AT1G66380.1 1st_1st 0.628158844 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G66380.1     MEGSSKGLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPS
gm050409_Glyma1 MEGSS-GVRKGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPN
                ***** *:*****:  **.***:*:. :****** ** *********************.

AT1G66380.1     IKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHEPCCKTKI
gm050409_Glyma1 IKRGDFNEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNAYMRRKKQE-TKSTV
                ****.*..*****::*********************:********::: :*::   *:.:

AT1G66380.1     KRINIITP---------P-------NTP--------------------AQKVD--IF---
gm050409_Glyma1 KPHEVIKPIPRVLTKTSPWLQRKFINSPKVGVSEEGATSSENWWETLLADKEDNAVFNNN
                *  ::*.*         *       *:*                    *:* *  :*   

AT1G66380.1     ------------------------------------------
gm050409_Glyma1 NNTCFFGGVHGELNLWNEELTSIDFDFVTQGELGGIVNFQNP
BoxShade v3.31 C (beta, 970507) Output
AT1G66380.1     M E G S S K G L R K G A W T A E E D S L L R Q C I G K Y G E G K W H Q V P L R A G L N R C R K S C R L R W L N Y L K P S
gm050409_Glyma1    M E G S S - G V R K G A W S Q F E D D L L R D C V N L H G E G K W H L V P Q R A G L N R C R K S C R L R W L N Y L K P N
 
AT1G66380.1     I K R G K F S S D E V D L L L R L H K L L G N R W S L I A G R L P G R T A N D V K N Y W N T H L S K K H E P C C K T K I
gm050409_Glyma1    I K R G D F N E D E V D L M I R L H K L L G N R W S L I A G R L P G R T S N D V K N Y W N A Y M R R K K Q E - T K S T V
 
AT1G66380.1     K R I N I I T P - - - - - - - - - P - - - - - - - N T P - - - - - - - - - - - - - - - - - - - - A Q K V D - - I F - - -
gm050409_Glyma1    K P H E V I K P I P R V L T K T S P W L Q R K F I N S P K V G V S E E G A T S S E N W W E T L L A D K E D N A V F N N N
 
AT1G66380.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm050409_Glyma1    N N T C F F G G V H G E L N L W N E E L T S I D F D F V T Q G E L G G I V N F Q N P
 
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