fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G67030.1 LENGIGLDLHLSLGP at 187/197 in AT1G67030.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050714 GGRERGLGLDLHLSL in 170/179 AT1G67030.1 1st_1st 0.366548042 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G67030.1     MA---------TETSSLKLFGINLLETTSVQNQSSEPRPGSGSGSE---SRKYECQYCCR
gm050714_Glyma1 MAEIEYHAKSNTNTQPLKLFGINI--SKSPEDQTHE----AGSNSEPFSSRKYECQYCCR
                **         *:*..*******:  :.* ::*: *    :**.**   ***********

AT1G67030.1     EFANSQALGGHQNAHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQP
gm050714_Glyma1 EFANSQALGGHQNAHKKERQLLKRAQMQAARGFVSSQ-IH---NTIISSFSP------QS
                *************************** *:**:   : :*   *.::*:*:*      *.

AT1G67030.1     HPPPHMMLSPSSSSSKWLYGEHMSS-QNAVGYFHGGRGLYGGGMESMAGEVKTHGGSLPE
gm050714_Glyma1 QPP----LS-------WLCTPHGGAYHSGAAFVASGRRIYVAAAGASITDGHGHRHPLPQ
                :**    **       **   * .: :....:. .** :* ..  :   : : *  .**:

AT1G67030.1     MRRFAGDSDRSSGIKLENGIGLDLHLSLGP
gm050714_Glyma1 FGGFNG--GEGSGGGRERGLGLDLHLSL--
                :  * *  ...**   *.*:********
BoxShade v3.31 C (beta, 970507) Output
AT1G67030.1     M A - - - - - - - - - T E T S S L K L F G I N L L E T T S V Q N Q S S E P R P G S G S G S E - - - S R K Y E C Q Y C C R
gm050714_Glyma1    M A E I E Y H A K S N T N T Q P L K L F G I N I - - S K S P E D Q T H E - - - - A G S N S E P F S S R K Y E C Q Y C C R
 
AT1G67030.1     E F A N S Q A L G G H Q N A H K K E R Q L L K R A Q M L A T R G L P R H H N F H P H T N P L L S A F A P L P H L L S Q P
gm050714_Glyma1    E F A N S Q A L G G H Q N A H K K E R Q L L K R A Q M Q A A R G F V S S Q - I H - - - N T I I S S F S P - - - - - - Q S
 
AT1G67030.1     H P P P H M M L S P S S S S S K W L Y G E H M S S - Q N A V G Y F H G G R G L Y G G G M E S M A G E V K T H G G S L P E
gm050714_Glyma1    Q P P - - - - L S - - - - - - - W L C T P H G G A Y H S G A A F V A S G R R I Y V A A A G A S I T D G H G H R H P L P Q
 
AT1G67030.1     M R R F A G D S D R S S G I K L E N G I G L D L H L S L G P
gm050714_Glyma1    F G G F N G - - G E G S G G G R E R G L G L D L H L S L - -
 
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