fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G68840.1 VQVVVRLFGVDIFNV at 304/352 in AT1G68840.1
VQVVVRLFGVDIFNV at 304/352 in AT1G68840.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055124 SGKMVRLFGVDLLKL in 297/342 AT1G25560.1 not_not 0.565891472 III
Gm028283 PVQMVRLFGVNLLKL in 311/351 AT1G25560.1 not_not 0.553488372 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G68840.1     MDSSCIDEISSSTSESFSATTAKKLSPPPAAALRLYRMGSGGSSVVLDPE----NGLETE
gm055124_Glyma2 MDGGSVTDETTTTSNSLSVPA--NLSPPP-----LSLVGSGATAVV-YPDGCCVSG-EAE
gm028283_Glyma1 MDGGCVTDETTTSSDSLSV-------PPP------SRVGSVASAVV-DPDGCCVSG-EAE
                **...: : ::::*:*:*.       ***        :** .::**  *:    .* *:*

AT1G68840.1     SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVV
gm055124_Glyma2 SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAHRFRGRDAVT
gm028283_Glyma1 SRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGPDAVT
                **************************************::****:***** **** ***.

AT1G68840.1     NFKNVL--EDGDLAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKRNGSST
gm055124_Glyma2 NFKPLAGADDAEAEFLSTHSKSEIVDMLRKHTYDNELQQSTR---------GGRRRRDAE
gm028283_Glyma1 NFKPPAASDDAESEFLNSHSKFEIVDMLRKHTYDDELQQSTR---------GGRRRLDAD
                ***     :*.:  **.:*** *********** :**:*..:         .*:*. .: 

AT1G68840.1     TQNDKVL--KTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLP----SPSPAV-----
gm055124_Glyma2 TASSGAFDAKAREQLFEKTVTQSDVGKLNRLVIPKQHAEKHFPLSGSGGGALPCMAAAAG
gm028283_Glyma1 TASSGVFDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSGDESSPCVAGASA
                * .. .:  *:** ****:** **********************.     . *.:     

AT1G68840.1     TKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLER
gm055124_Glyma2 AKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGLDR
gm028283_Glyma1 AKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGPDR
                :**:*:*****.************************************.* * :*** :*

AT1G68840.1     QLYIDWKVRSG--------------PRENPVQVVVRLFGVDIFNVTTVKPNDVVAVCGGK
gm055124_Glyma2 QLYIDCKARSG--------------------K-MVRLFGVDLLKLPVPGSDGIGVGCDGK
gm028283_Glyma1 QLYIDCKARSGEVNNNAGGLFVPIGPVVEPVQ-MVRLFGVNLLKLPVPGSDGV-----GK
                ***** *.***                    : :******:::::..  .:.:     **

AT1G68840.1     RSRDVDDMFALRCSKKQAIINAL
gm055124_Glyma2 RKE--MELFAFECSKKLKVIGAL
gm028283_Glyma1 RKE--MELFAFECCKKLKVIGAL
                *..   ::**:.*.**  :*.**
BoxShade v3.31 C (beta, 970507) Output
AT1G68840.1     M D S S C I D E I S S S T S E S F S A T T A K K L S P P P A A A L R L Y R M G S G G S S V V L D P E - - - - N G L E T E
gm055124_Glyma2    M D G G S V T D E T T T T S N S L S V P A - - N L S P P P - - - - - L S L V G S G A T A V V - Y P D G C C V S G - E A E
gm028283_Glyma1    M D G G C V T D E T T T S S D S L S V - - - - - - - P P P - - - - - - S R V G S V A S A V V - D P D G C C V S G - E A E
 
AT1G68840.1     S R K L P S S K Y K G V V P Q P N G R W G A Q I Y E K H Q R V W L G T F N E Q E E A A R S Y D I A A C R F R G R D A V V
gm055124_Glyma2    S R K L P S S K Y K G V V P Q P N G R W G A Q I Y E K H Q R V W L G T F N E E D E A A R A Y D I A A H R F R G R D A V T
gm028283_Glyma1    S R K L P S S K Y K G V V P Q P N G R W G A Q I Y E K H Q R V W L G T F N E E D E A A R A Y D I A A L R F R G P D A V T
 
AT1G68840.1     N F K N V L - - E D G D L A F L E A H S K A E I V D M L R K H T Y A D E L E Q N N K R Q L F L S V D A N G K R N G S S T
gm055124_Glyma2    N F K P L A G A D D A E A E F L S T H S K S E I V D M L R K H T Y D N E L Q Q S T R - - - - - - - - - G G R R R R D A E
gm028283_Glyma1    N F K P P A A S D D A E S E F L N S H S K F E I V D M L R K H T Y D D E L Q Q S T R - - - - - - - - - G G R R R L D A D
 
AT1G68840.1     T Q N D K V L - - K T R E V L F E K A V T P S D V G K L N R L V I P K Q H A E K H F P L P - - - - S P S P A V - - - - -
gm055124_Glyma2    T A S S G A F D A K A R E Q L F E K T V T Q S D V G K L N R L V I P K Q H A E K H F P L S G S G G G A L P C M A A A A G
gm028283_Glyma1    T A S S G V F D A K A R E Q L F E K T V T P S D V G K L N R L V I P K Q H A E K H F P L S G S G D E S S P C V A G A S A
 
AT1G68840.1     T K G V L I N F E D V N G K V W R F R Y S Y W N S S Q S Y V L T K G W S R F V K E K N L R A G D V V T F E R S T G L E R
gm055124_Glyma2    A K G M L L N F E D V G G K V W R F R Y S Y W N S S Q S Y V L T K G W S R F V K E K N L R A G D A V Q F F K S T G L D R
gm028283_Glyma1    A K G M L L N F E D V G G K V W R F R Y S Y W N S S Q S Y V L T K G W S R F V K E K N L R A G D A V Q F F K S T G P D R
 
AT1G68840.1     Q L Y I D W K V R S G - - - - - - - - - - - - - - P R E N P V Q V V V R L F G V D I F N V T T V K P N D V V A V C G G K
gm055124_Glyma2    Q L Y I D C K A R S G - - - - - - - - - - - - - - - - - - - - K - M V R L F G V D L L K L P V P G S D G I G V G C D G K
gm028283_Glyma1    Q L Y I D C K A R S G E V N N N A G G L F V P I G P V V E P V Q - M V R L F G V N L L K L P V P G S D G V - - - - - G K
 
AT1G68840.1     R S R D V D D M F A L R C S K K Q A I I N A L
gm055124_Glyma2    R K E - - M E L F A F E C S K K L K V I G A L
gm028283_Glyma1    R K E - - M E L F A F E C C K K L K V I G A L
 
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