fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G70000.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm000561 not found in 300aa AT1G70000.1 1st_1st 0.557919621 Ia
Pt041920 EDQFPALSLKLSTPSS in 273/312 AT1G70000.1 1st_1st 0.543735224 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G70000.1     -MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRV-TEASSSCFRKSVS
pt041920_POPTR_ MMPRSCSQCGNNGHNSRTC-GESPAGGDQSSSTG----IMLFGVRV-TEVAAS-FRKSYS
gm000561_Glyma0 -MSRTCSQCGNNGHNSRTC-TDGGAAGSPRENG-----IMLFGVRVMTEANSS-FRKSAS
                 *.*:**************  :  : *.  ..      ******** **. :* **** *

AT1G70000.1     MNNLSQFDQTPDPNPTDD--GGYASDDVVHASGRNRERKRGTPWTEEEHRLFLTGLHKVG
pt041920_POPTR_ MNNLSQYDEQPHEEPNADVAAGYESDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQKVG
gm000561_Glyma0 MNNLSQYDAEFN---AAD--AGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVG
                ******:*   .     *  .** **********.******.*******:*** **:***

AT1G70000.1     KGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSS--KEE
pt041920_POPTR_ KGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNQNRRRRRSSLFDITTDTFMGSS--MEE
gm000561_Glyma0 KGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEE
                ******************************* ***************.*:.: **   **

AT1G70000.1     NQLQ-----------------------------------------------TPLE-----
pt041920_POPTR_ DQVHQETATPALPQLQLQPRPCLNNNRPGGFPMSTFPVTVISPVTSPVSGDNPLEKLTSG
gm000561_Glyma0 EQVPPETVAAPLPA-AYPP------SHYGAFAGAGFP---IAPVVLPVSG----ERLT--
                :*:                                                   *     

AT1G70000.1     ----------LIRPVPIPIPIPPSRKMADLNLNKKKTPATT---EMFP-LSLNLQRPS--
pt041920_POPTR_ QTNVNKKSSKLVRPVPI-VPIPPSSKMADLNLNQK---SPE---DQFPALSLKLSTP---
gm000561_Glyma0 ---------KPIRPTPI-LPVPPSSKMANLNLKEKA--SPTNLIEPLP-LSLNLPSPTPR
                           :**.** :*:*** ***:***::*   :.    : :* ***:*  *   

AT1G70000.1     --SSTSSSSNEQKARGSRASSGFEAMS-----SNGDSIMGVA
pt041920_POPTR_ -----SSEEQQQSPPASTHSSTFQAIS-----SS-DSIISVA
gm000561_Glyma0 SQDQSSASSGHSSPSSSSSAAAFQAMSAAKFGSGGDSIISVA
                     *:.. .... .*  :: *:*:*     *. ***:.**
BoxShade v3.31 C (beta, 970507) Output
AT1G70000.1     - M S R S C S Q C G N N G H N S R T C P T D I T T T G D N N D K G G G E K A I M L F G V R V - T E A S S S C F R K S V S
pt041920_POPTR_    M M P R S C S Q C G N N G H N S R T C - G E S P A G G D Q S S S T G - - - - I M L F G V R V - T E V A A S - F R K S Y S
gm000561_Glyma0    - M S R T C S Q C G N N G H N S R T C - T D G G A A G S P R E N G - - - - - I M L F G V R V M T E A N S S - F R K S A S
 
AT1G70000.1     M N N L S Q F D Q T P D P N P T D D - - G G Y A S D D V V H A S G R N R E R K R G T P W T E E E H R L F L T G L H K V G
pt041920_POPTR_    M N N L S Q Y D E Q P H E E P N A D V A A G Y E S D D V V H A S G R S R E R K R G V P W T E E E H K L F L L G L Q K V G
gm000561_Glyma0    M N N L S Q Y D A E F N - - - A A D - - A G Y A S D D V V H A S G R T R E R K R G V P W T E E E H R L F L L G L H K V G
 
AT1G70000.1     K G D W R G I S R N F V K T R T P T Q V A S H A Q K Y F L R R T N Q N R R R R R S S L F D I T P D S F I G S S - - K E E
pt041920_POPTR_    K G D W R G I S R N F V K T R T P T Q V A S H A Q K Y F L R R N N Q N R R R R R S S L F D I T T D T F M G S S - - M E E
gm000561_Glyma0    K G D W R G I S R N F V K T R T P T Q V A S H A Q K Y F L R R H N Q N R R R R R S S L F D I T T D T V M E S S T I M E E
 
AT1G70000.1     N Q L Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - T P L E - - - - -
pt041920_POPTR_    D Q V H Q E T A T P A L P Q L Q L Q P R P C L N N N R P G G F P M S T F P V T V I S P V T S P V S G D N P L E K L T S G
gm000561_Glyma0    E Q V P P E T V A A P L P A - A Y P P - - - - - - S H Y G A F A G A G F P - - - I A P V V L P V S G - - - - E R L T - -
 
AT1G70000.1     - - - - - - - - - - L I R P V P I P I P I P P S R K M A D L N L N K K K T P A T T - - - E M F P - L S L N L Q R P S - -
pt041920_POPTR_    Q T N V N K K S S K L V R P V P I - V P I P P S S K M A D L N L N Q K - - - S P E - - - D Q F P A L S L K L S T P - - -
gm000561_Glyma0    - - - - - - - - - K P I R P T P I - L P V P P S S K M A N L N L K E K A - - S P T N L I E P L P - L S L N L P S P T P R
 
AT1G70000.1     - - S S T S S S S N E Q K A R G S R A S S G F E A M S - - - - - S N G D S I M G V A
pt041920_POPTR_    - - - - - S S E E Q Q Q S P P A S T H S S T F Q A I S - - - - - S S - D S I I S V A
gm000561_Glyma0    S Q D Q S S A S S G H S S P S S S S S A A A F Q A M S A A K F G S G G D S I I S V A
 
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