fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G70000.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt041920 EDQFPALSLKLSTPSS in 273/312 AT1G70000.1 1st_1st 0.543735224 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G70000.1     -MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSM
pt041920_POPTR_ MMPRSCSQCGNNGHNSRTC-GESPAGGDQSSSTG----IMLFGVRVTEVAAS-FRKSYSM
                 *.****************  : .: **:... *    **********.::* **** **

AT1G70000.1     NNLSQFDQTPDPNPTDD--GGYASDDVVHASGRNRERKRGTPWTEEEHRLFLTGLHKVGK
pt041920_POPTR_ NNLSQYDEQPHEEPNADVAAGYESDDVVHASGRSRERKRGVPWTEEEHKLFLLGLQKVGK
                *****:*: *. :*. *  .** **********.******.*******:*** **:****

AT1G70000.1     GDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSSKEENQL
pt041920_POPTR_ GDWRGISRNFVKTRTPTQVASHAQKYFLRRNNQNRRRRRSSLFDITTDTFMGSSMEEDQV
                ******************************.***************.*:*:*** **:*:

AT1G70000.1     Q-----------------------------------------------TPLE--------
pt041920_POPTR_ HQETATPALPQLQLQPRPCLNNNRPGGFPMSTFPVTVISPVTSPVSGDNPLEKLTSGQTN
                :                                               .***        

AT1G70000.1     -------LIRPVPIPIPIPPSRKMADLNLNKKKTPATTEMFP-LSLNLQRPSSSTSSSSN
pt041920_POPTR_ VNKKSSKLVRPVPI-VPIPPSSKMADLNLNQK---SPEDQFPALSLKLSTP----SSEEQ
                       *:***** :***** ********:*   :. : ** ***:*. *    **..:

AT1G70000.1     EQKARGSRASSGFEAMSSNGDSIMGVA
pt041920_POPTR_ QQSPPASTHSSTFQAISSS-DSIISVA
                :*.. .*  ** *:*:**. ***:.**
BoxShade v3.31 C (beta, 970507) Output
AT1G70000.1     - M S R S C S Q C G N N G H N S R T C P T D I T T T G D N N D K G G G E K A I M L F G V R V T E A S S S C F R K S V S M
pt041920_POPTR_    M M P R S C S Q C G N N G H N S R T C - G E S P A G G D Q S S S T G - - - - I M L F G V R V T E V A A S - F R K S Y S M
 
AT1G70000.1     N N L S Q F D Q T P D P N P T D D - - G G Y A S D D V V H A S G R N R E R K R G T P W T E E E H R L F L T G L H K V G K
pt041920_POPTR_    N N L S Q Y D E Q P H E E P N A D V A A G Y E S D D V V H A S G R S R E R K R G V P W T E E E H K L F L L G L Q K V G K
 
AT1G70000.1     G D W R G I S R N F V K T R T P T Q V A S H A Q K Y F L R R T N Q N R R R R R S S L F D I T P D S F I G S S K E E N Q L
pt041920_POPTR_    G D W R G I S R N F V K T R T P T Q V A S H A Q K Y F L R R N N Q N R R R R R S S L F D I T T D T F M G S S M E E D Q V
 
AT1G70000.1     Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - T P L E - - - - - - - -
pt041920_POPTR_    H Q E T A T P A L P Q L Q L Q P R P C L N N N R P G G F P M S T F P V T V I S P V T S P V S G D N P L E K L T S G Q T N
 
AT1G70000.1     - - - - - - - L I R P V P I P I P I P P S R K M A D L N L N K K K T P A T T E M F P - L S L N L Q R P S S S T S S S S N
pt041920_POPTR_    V N K K S S K L V R P V P I - V P I P P S S K M A D L N L N Q K - - - S P E D Q F P A L S L K L S T P - - - - S S E E Q
 
AT1G70000.1     E Q K A R G S R A S S G F E A M S S N G D S I M G V A
pt041920_POPTR_    Q Q S P P A S T H S S T F Q A I S S S - D S I I S V A
 
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