fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G71520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt013342 not found in 185aa AT1G22810.1 1st_not 0.474226804 II
Pt015463 not found in 168aa AT1G71520.1 not_1st 0.467353951 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G71520.1     ---------------MDSRDTGETDQSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFST
pt013342_POPTR_ MSGSSGGSSSSSSRIIDQESGASESQRKFKGARRRKWGKWVSEIRIPGKQERLWLGSYST
pt015463_POPTR_ MSG------SSSSR-TDQESGASAARKKFKGVRRRKWGKWVSEIRIPGKQDRLWLGSYST
                                *... ..  : *:** *************:**.::******:**

AT1G71520.1     AEGAAVAHDVAFYCLHRPSSLDDESFNFPHLLTTSLASNISPKSIQKAASDAGMAVDAGF
pt013342_POPTR_ PEAAAVAHDIASYCLRGPSSL--ESLNFPLMLPASVREDMSPKSIQKAASDAGMAIDAQM
pt015463_POPTR_ PEAAAVAHDIASYCLRGPSSI--ESLNFPLMLPASVREDMSPKSIQKAASDAGMAIDAQM
                .*.******:* ***: ***:  **:*** :*.:*: .::***************:** :

AT1G71520.1     --------------------HG--------AVSGSGG----C-EERSSMANMEEEDKLSI
pt013342_POPTR_ ILNRSLQNEVKVGPENVAINHGPQTQLWEPAAGGGGDSSNRCENWHENNIGTRVGDDLNI
pt015463_POPTR_ ILNRVPENEVKFWTASGGVNHGLEIELCEPAGGDHGG------NWHGNNTGMREGD---I
                                    **        * .. *.      : : .  . .  *   *

AT1G71520.1     SVYDYLEDDLV
pt013342_POPTR_ SIEDYLM----
pt015463_POPTR_ SIEDYL-----
                *: ***
BoxShade v3.31 C (beta, 970507) Output
AT1G71520.1     - - - - - - - - - - - - - - - M D S R D T G E T D Q S K Y K G I R R R K W G K W V S E I R V P G T R Q R L W L G S F S T
pt013342_POPTR_    M S G S S G G S S S S S S R I I D Q E S G A S E S Q R K F K G A R R R K W G K W V S E I R I P G K Q E R L W L G S Y S T
pt015463_POPTR_    M S G - - - - - - S S S S R - T D Q E S G A S A A R K K F K G V R R R K W G K W V S E I R I P G K Q D R L W L G S Y S T
 
AT1G71520.1     A E G A A V A H D V A F Y C L H R P S S L D D E S F N F P H L L T T S L A S N I S P K S I Q K A A S D A G M A V D A G F
pt013342_POPTR_    P E A A A V A H D I A S Y C L R G P S S L - - E S L N F P L M L P A S V R E D M S P K S I Q K A A S D A G M A I D A Q M
pt015463_POPTR_    P E A A A V A H D I A S Y C L R G P S S I - - E S L N F P L M L P A S V R E D M S P K S I Q K A A S D A G M A I D A Q M
 
AT1G71520.1     - - - - - - - - - - - - - - - - - - - - H G - - - - - - - - A V S G S G G - - - - C - E E R S S M A N M E E E D K L S I
pt013342_POPTR_    I L N R S L Q N E V K V G P E N V A I N H G P Q T Q L W E P A A G G G G D S S N R C E N W H E N N I G T R V G D D L N I
pt015463_POPTR_    I L N R V P E N E V K F W T A S G G V N H G L E I E L C E P A G G D H G G - - - - - - N W H G N N T G M R E G D - - - I
 
AT1G71520.1     S V Y D Y L E D D L V
pt013342_POPTR_    S I E D Y L M - - - -
pt015463_POPTR_    S I E D Y L - - - - -
 
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