fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G71520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm002394 not found in 152aa AT1G71520.1 1st_1st 0.439862542 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G71520.1     MDSRDTGETDQSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCL
gm002394_Glyma0 MRSSSSAK----KLKGVRRRKWGKWVSEIRVPGTQGRLWLGTYATQEAAAVAHDVAVYCL
                * * .:.:    * **:*****************: *****:::* *.********.***

AT1G71520.1     HRPSSLDDESFNFPHLLTT-SLA-SNISPKSIQKAASDAGMAVDA---------------
gm002394_Glyma0 RRPSSLD--KLNFPETLSSFSLQLRDMSPRSVQKVASDIGMDVDARNILAGGADEHSDVF
                :******  .:***. *:: **   ::**:*:**.*** ** ***               

AT1G71520.1     ---------GFHGAVSGSGG-CEERSSMANMEEEDKLSISVYDYLEDDLV
gm002394_Glyma0 RWDAVGNEDG--GSWHGSGGDCKER--------DQALSISIEDYLELS--
                         *  *:  **** *:**        :: ****: **** .
BoxShade v3.31 C (beta, 970507) Output
AT1G71520.1     M D S R D T G E T D Q S K Y K G I R R R K W G K W V S E I R V P G T R Q R L W L G S F S T A E G A A V A H D V A F Y C L
gm002394_Glyma0    M R S S S S A K - - - - K L K G V R R R K W G K W V S E I R V P G T Q G R L W L G T Y A T Q E A A A V A H D V A V Y C L
 
AT1G71520.1     H R P S S L D D E S F N F P H L L T T - S L A - S N I S P K S I Q K A A S D A G M A V D A - - - - - - - - - - - - - - -
gm002394_Glyma0    R R P S S L D - - K L N F P E T L S S F S L Q L R D M S P R S V Q K V A S D I G M D V D A R N I L A G G A D E H S D V F
 
AT1G71520.1     - - - - - - - - - G F H G A V S G S G G - C E E R S S M A N M E E E D K L S I S V Y D Y L E D D L V
gm002394_Glyma0    R W D A V G N E D G - - G S W H G S G G D C K E R - - - - - - - - D Q A L S I S I E D Y L E L S - -
 
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