fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G71520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm002394 not found in 152aa AT1G71520.1 1st_1st 0.439862542 Ia
Gm029484 not found in 179aa AT1G71520.1 not_1st 0.439862542 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G71520.1     MDSRDTGE----TDQSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVA
gm002394_Glyma0 --MRSS------SSAKKLKGVRRRKWGKWVSEIRVPGTQGRLWLGTYATQEAAAVAHDVA
gm029484_Glyma1 -MSRSSAMHGITSTNNKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVA
                   *.:      :  .* **:*****************: *****:::* *.********

AT1G71520.1     FYCLHRPSSLDDESFNFPHLLTT-SLA-SNISPKSIQKAASDAGMAVDAGFHGAVSGSG-
gm002394_Glyma0 VYCLRRPSSLD--KLNFPETLSSFSLQLRDMSPRSVQKVASDIGMDVDA--RNILAG---
gm029484_Glyma1 VYCLSRPSSLD--KLNFPETLSSYSVQLRDMSPRSVQKVASDVGMDVDA--RNIVAGKTS
                .*** ******  .:***. *:: *:   ::**:*:**.*** ** ***  :. ::*   

AT1G71520.1     -------------------------GCEERS------------------SMANMEEED-K
gm002394_Glyma0 -------------------------GADEHSDVFRWDAVGNEDGGSWHGSGGDCKERDQA
gm029484_Glyma1 TVGAETNCESDERTSTASVCNVVGEGGADHSDVFWWD----DDGGSWHGSGGDSTERD-A
                                         *  ::*                  * .:  *.*  

AT1G71520.1     LSISVYDYLEDDLV
gm002394_Glyma0 LSISIEDYLELS--
gm029484_Glyma1 LSISIEDYL-----
                ****: ***
BoxShade v3.31 C (beta, 970507) Output
AT1G71520.1     M D S R D T G E - - - - T D Q S K Y K G I R R R K W G K W V S E I R V P G T R Q R L W L G S F S T A E G A A V A H D V A
gm002394_Glyma0    - - M R S S - - - - - - S S A K K L K G V R R R K W G K W V S E I R V P G T Q G R L W L G T Y A T Q E A A A V A H D V A
gm029484_Glyma1    - M S R S S A M H G I T S T N N K L K G V R R R K W G K W V S E I R V P G T Q E R L W L G T Y A T P E A A A V A H D V A
 
AT1G71520.1     F Y C L H R P S S L D D E S F N F P H L L T T - S L A - S N I S P K S I Q K A A S D A G M A V D A G F H G A V S G S G -
gm002394_Glyma0    V Y C L R R P S S L D - - K L N F P E T L S S F S L Q L R D M S P R S V Q K V A S D I G M D V D A - - R N I L A G - - -
gm029484_Glyma1    V Y C L S R P S S L D - - K L N F P E T L S S Y S V Q L R D M S P R S V Q K V A S D V G M D V D A - - R N I V A G K T S
 
AT1G71520.1     - - - - - - - - - - - - - - - - - - - - - - - - - G C E E R S - - - - - - - - - - - - - - - - - - S M A N M E E E D - K
gm002394_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - G A D E H S D V F R W D A V G N E D G G S W H G S G G D C K E R D Q A
gm029484_Glyma1    T V G A E T N C E S D E R T S T A S V C N V V G E G G A D H S D V F W W D - - - - D D G G S W H G S G G D S T E R D - A
 
AT1G71520.1     L S I S V Y D Y L E D D L V
gm002394_Glyma0    L S I S I E D Y L E L S - -
gm029484_Glyma1    L S I S I E D Y L - - - - -
 
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