fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G71930.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt013956 not found in 307aa AT1G71930.1 not_1st 0.480127186 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G71930.1     MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKMEPWDIQARCKL
pt013956_POPTR_ ----MESCVPPGFRFHPTEEELVGYYLKRKIDSQKIDLDVIANIDLYKMEPWDIQARCNL
                    *:*.:******************.***:* *  ****.:***************:*

AT1G71930.1     GYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIGMRKTLVYYKG
pt013956_POPTR_ GYAEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNRLIGMRKTLVFYKG
                ** ******************************************* :********:***

AT1G71930.1     RAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYEPWQNQLY--HV
pt013956_POPTR_ RAPNGRKTDWIMHEYRLQTSEHGPPQEEGWVVCRAFKKPSPNQRQ-GFEAWSHAYYLNDI
                *******:**********.** .* ***********:** ****  *:*.*.:  *  .:

AT1G71930.1     ESSNNYSSSVTMNTSHHI-----GAS-SSSHNLNQMLMSNNHYNPNNTSSSMHQYGNIEL
pt013956_POPTR_ NHARPPSFSDTVTTAHNMVRPNQGASFQQPFGSNSDLVSNQTFLDNNNQL-------VEL
                : :.  * * *:.*:*::     *** ..... *. *:**: :  **..        :**

AT1G71930.1     PQLDSPS-LSPSL----GTNKDQNESFEQEEEKSFNC---VDWRTLDTLLETQ-------
pt013956_POPTR_ PELDSPSTLSTSFAAKEGNFHQTNEDY--DEERSNNSSQYIDWKNFDTLLASQRDVVEHQ
                *:***** **.*:    *. :: **.:  :**:* *.   :**:.:**** :*       

AT1G71930.1     -VIHPHNPNILMFETQSYNPAPSFPSMHQSYNEVEANIHHSLGCFPDS
pt013956_POPTR_ LLLQNH---VATLPSASSVPVESF------------------------
                 ::: *   :  : : *  *. **
BoxShade v3.31 C (beta, 970507) Output
AT1G71930.1     M D N I M Q S S M P P G F R F H P T E E E L V G Y Y L D R K I N S M K S A L D V I V E I D L Y K M E P W D I Q A R C K L
pt013956_POPTR_    - - - - M E S C V P P G F R F H P T E E E L V G Y Y L K R K I D S Q K I D L D V I A N I D L Y K M E P W D I Q A R C N L
 
AT1G71930.1     G Y E E Q N E W Y F F S H K D R K Y P T G T R T N R A T A A G F W K A T G R D K A V L S K N S V I G M R K T L V Y Y K G
pt013956_POPTR_    G Y A E Q N E W Y F F S H K D R K Y P T G T R T N R A T A A G F W K A T G R D K A V L S K N R L I G M R K T L V F Y K G
 
AT1G71930.1     R A P N G R K S D W I M H E Y R L Q N S E L A P V Q E E G W V V C R A F R K P I P N Q R P L G Y E P W Q N Q L Y - - H V
pt013956_POPTR_    R A P N G R K T D W I M H E Y R L Q T S E H G P P Q E E G W V V C R A F K K P S P N Q R Q - G F E A W S H A Y Y L N D I
 
AT1G71930.1     E S S N N Y S S S V T M N T S H H I - - - - - G A S - S S S H N L N Q M L M S N N H Y N P N N T S S S M H Q Y G N I E L
pt013956_POPTR_    N H A R P P S F S D T V T T A H N M V R P N Q G A S F Q Q P F G S N S D L V S N Q T F L D N N N Q L - - - - - - - V E L
 
AT1G71930.1     P Q L D S P S - L S P S L - - - - G T N K D Q N E S F E Q E E E K S F N C - - - V D W R T L D T L L E T Q - - - - - - -
pt013956_POPTR_    P E L D S P S T L S T S F A A K E G N F H Q T N E D Y - - D E E R S N N S S Q Y I D W K N F D T L L A S Q R D V V E H Q
 
AT1G71930.1     - V I H P H N P N I L M F E T Q S Y N P A P S F P S M H Q S Y N E V E A N I H H S L G C F P D S
pt013956_POPTR_    L L L Q N H - - - V A T L P S A S S V P V E S F - - - - - - - - - - - - - - - - - - - - - - - -
 
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