fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G71930.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028436 not found in 346aa AT1G71930.1 1st_1st 0.472178060 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G71930.1     --MDNI--------MQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKME
gm028436_Glyma1 MSLTQIPERSSSIDMESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKME
                  : :*        *:*.:**********:*******.*****:*  *************

AT1G71930.1     PWDIQARCKLGYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIG
gm028436_Glyma1 PWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIG
                ***** *******:***********:**************************:*** :**

AT1G71930.1     MRKTLVYYKGRAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYE-
gm028436_Glyma1 MRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRP-GFDH
                ******:**********:******** *.** .* ************** *.:** *:: 

AT1G71930.1     PW-----QNQLYHVESSNNYSS---------SVTMNTSH---------HIGASSSSHNLN
gm028436_Glyma1 PWCSTSSQQQHFFRDQIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLN
                **     *:* :. :. :.***         . * *..*         *  :*. .::**

AT1G71930.1     QMLMSNNHYNPNNTSSSMHQYGNIELPQLDSPSLSPSLGT-NKDQNESFEQEE----EKS
gm028436_Glyma1 NLL--------SNQTVAIMDKQLIELPQLDSPTASLAIKECNQQQHNGLTNEEYCSDERS
                ::*        .* : :: :   *********: * ::   *::*::.: :**    *:*

AT1G71930.1     FNC----VDWRTLDTLLETQVIHPHNPNILMFETQSYNPAPSFPSMHQSYNEVEANIHHS
gm028436_Glyma1 NNSNAQGIDWKSLDNLFGSQ----------LSDNAAYFSHPNLPLM-MPHNHDQAS--HI
                 *.    :**::**.*: :*          : :. :* . *.:* *  .:*. :*.  * 

AT1G71930.1     LGCFPDS-
gm028436_Glyma1 LGCFPDSS
                *******
BoxShade v3.31 C (beta, 970507) Output
AT1G71930.1     - - M D N I - - - - - - - - M Q S S M P P G F R F H P T E E E L V G Y Y L D R K I N S M K S A L D V I V E I D L Y K M E
gm028436_Glyma1    M S L T Q I P E R S S S I D M E S C V P P G F R F H P T E D E L V G Y Y L K R K I N S L K I D L D V I V E I D L Y K M E
 
AT1G71930.1     P W D I Q A R C K L G Y E E Q N E W Y F F S H K D R K Y P T G T R T N R A T A A G F W K A T G R D K A V L S K N S V I G
gm028436_Glyma1    P W D I Q D R C K L G Y E Q Q N E W Y F F S H K D K K Y P T G T R T N R A T A A G F W K A T G R D K A V M S K N R I I G
 
AT1G71930.1     M R K T L V Y Y K G R A P N G R K S D W I M H E Y R L Q N S E L A P V Q E E G W V V C R A F R K P I P N Q R P L G Y E -
gm028436_Glyma1    M R K T L V F Y K G R A P N G R K T D W I M H E Y R H Q T S E H G P P Q E E G W V V C R A F R K P S P S H R P - G F D H
 
AT1G71930.1     P W - - - - - Q N Q L Y H V E S S N N Y S S - - - - - - - - - S V T M N T S H - - - - - - - - - H I G A S S S S H N L N
gm028436_Glyma1    P W C S T S S Q Q Q H F F R D Q I Q S Y S S R P L S I A D I L D E T N N V P H P N A E G T S F S H P F S S D H Q Q H L N
 
AT1G71930.1     Q M L M S N N H Y N P N N T S S S M H Q Y G N I E L P Q L D S P S L S P S L G T - N K D Q N E S F E Q E E - - - - E K S
gm028436_Glyma1    N L L - - - - - - - - S N Q T V A I M D K Q L I E L P Q L D S P T A S L A I K E C N Q Q Q H N G L T N E E Y C S D E R S
 
AT1G71930.1     F N C - - - - V D W R T L D T L L E T Q V I H P H N P N I L M F E T Q S Y N P A P S F P S M H Q S Y N E V E A N I H H S
gm028436_Glyma1    N N S N A Q G I D W K S L D N L F G S Q - - - - - - - - - - L S D N A A Y F S H P N L P L M - M P H N H D Q A S - - H I
 
AT1G71930.1     L G C F P D S -
gm028436_Glyma1    L G C F P D S S
 
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