fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G74500.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004762 not found in 90aa AT5G39860.1 not_not 0.701388888 III
Pt019267 not found in 90aa AT5G39860.1 not_not 0.6875 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G74500.1     MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN
pt019267_POPTR_ MSSR--RSRQSS-VPRITDDQIIHLVSKLRQLLPEIR-QRRSDKVSASKVLQETCNYIKN
pt004762_POPTR_ MSSR--RPRQSS-VPRITDDQIIDLVSKLRQLLPEIS-QRRSDKVSASKVLQETCNYIRN
                **.*  *.**** ..**::*** .*: **:*****:  .********::***:*****:*

AT1G74500.1     LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ
pt019267_POPTR_ LHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
pt004762_POPTR_ LHREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
                *************:***  ::*:.:* :****:
BoxShade v3.31 C (beta, 970507) Output
AT1G74500.1     M S G R R S R S R Q S S G T S R I S E D Q I N D L I I K L Q Q L L P E L R D S R R S D K V S A A R V L Q D T C N Y I R N
pt019267_POPTR_    M S S R - - R S R Q S S - V P R I T D D Q I I H L V S K L R Q L L P E I R - Q R R S D K V S A S K V L Q E T C N Y I K N
pt004762_POPTR_    M S S R - - R P R Q S S - V P R I T D D Q I I D L V S K L R Q L L P E I S - Q R R S D K V S A S K V L Q E T C N Y I R N
 
AT1G74500.1     L H R E V D D L S E R L S E L L A - - N S D T A Q A A L I R S L L T Q
pt019267_POPTR_    L H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
pt004762_POPTR_    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
 
0