fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G74500.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt023817 not found in 91aa AT1G74500.1 1st_1st 0.763888888 Ia
Pt004762 not found in 90aa AT5G39860.1 not_not 0.701388888 III
Pt019267 not found in 90aa AT5G39860.1 not_not 0.6875 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G74500.1     MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN
pt019267_POPTR_ MSSR--RSRQSS-VPRITDDQIIHLVSKLRQLLPEIRQ-RRSDKVSASKVLQETCNYIKN
pt004762_POPTR_ MSSR--RPRQSS-VPRITDDQIIDLVSKLRQLLPEISQ-RRSDKVSASKVLQETCNYIRN
pt023817_POPTR_ MSSRRSRSRQSS-SSRISDDQILDLVTKLQQLLPEIRN-RRSDKVSAAKILQETCNYIKS
                **.*  *.****  .**::*** .*: **:*****: : ********:::**:*****:.

AT1G74500.1     LHREVDDLSERLSELLAN--SDTAQAALIRSLLTQ
pt019267_POPTR_ LHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
pt004762_POPTR_ LHREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
pt023817_POPTR_ LHREVGDLSERLSELLET--TDTAQAAIIRNLLMQ
                *****.*******:** .  :*:.:* :**.*:
BoxShade v3.31 C (beta, 970507) Output
AT1G74500.1     M S G R R S R S R Q S S G T S R I S E D Q I N D L I I K L Q Q L L P E L R D S R R S D K V S A A R V L Q D T C N Y I R N
pt019267_POPTR_    M S S R - - R S R Q S S - V P R I T D D Q I I H L V S K L R Q L L P E I R Q - R R S D K V S A S K V L Q E T C N Y I K N
pt004762_POPTR_    M S S R - - R P R Q S S - V P R I T D D Q I I D L V S K L R Q L L P E I S Q - R R S D K V S A S K V L Q E T C N Y I R N
pt023817_POPTR_    M S S R R S R S R Q S S - S S R I S D D Q I L D L V T K L Q Q L L P E I R N - R R S D K V S A A K I L Q E T C N Y I K S
 
AT1G74500.1     L H R E V D D L S E R L S E L L A N - - S D T A Q A A L I R S L L T Q
pt019267_POPTR_    L H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
pt004762_POPTR_    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
pt023817_POPTR_    L H R E V G D L S E R L S E L L E T - - T D T A Q A A I I R N L L M Q
 
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