fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G78700.1 ESGSDDLELTLGNSST at 313/325 in AT1G78700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt030017 ECGSDDLELTLGNSRT in 317/328 AT1G78700.1 1st_1st 0.704545454 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G78700.1     MTSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAG
pt030017_POPTR_ MTSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAG
                ******:***:********************:********:*******************

AT1G78700.1     WIVEPDGTTYRKGCSRPVERMEIGGGSATASPCSSYQPSPCASYNPSPGSSNFMSPASSS
pt030017_POPTR_ WTVEPDGTTFRKGC-KPVERMDILGVSATTSPCSSYHPSPCASYNPSPGSSSFPSPASSS
                * *******:**** :*****:* * ***:******:**************.* ******

AT1G78700.1     FANLTSGDGQSLIPWLKHLSTTSSSSASSSSRLPNYLYIPGGSISAPVTPPLSSPTARTP
pt030017_POPTR_ YAANANMDCNSLIPWLKNLS--SASSSASSSKFP-HLYIHGGSISAPVTPPLSSPTARTA
                :*  :. * :*******:**  *:**::***::* :*** *******************.

AT1G78700.1     RMNTDWQQLN---------NSFFVSSTPPSPTRQIIPDSEWFSGIQLAQSVPASPTFSLV
pt030017_POPTR_ RIKADWEDQSIRPGWGGQHYSFLPSSTPPSPGRQIVPDPEWFRGIRIPQGGPTSPTFSLV
                *:::**:: .          **: ******* ***:**.*** **::.*. *:*******

AT1G78700.1     SQNPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAFG
pt030017_POPTR_ ASNPFGFKEEAFGGGGSNGGSRMWTPGQSGTCSPAIAAGSDHTADIPMAE--ISDEFAFR
                :.********* ...*..******************..*:*:***:**:*   . **** 

AT1G78700.1     SNTNGLVKAWEGERIHEESGSDDLELTLGNSSTR
pt030017_POPTR_ CNATGLVKPWEGERIHEECGSDDLELTLGNSRTR
                .*:.****.*********.************ **
BoxShade v3.31 C (beta, 970507) Output
AT1G78700.1     M T S G T R M P T W R E R E N N K R R E R R R R A I A A K I F T G L R M Y G N Y E L P K H C D N N E V L K A L C N E A G
pt030017_POPTR_    M T S G T R L P T W K E R E N N K R R E R R R R A I A A K I F S G L R M Y G N Y K L P K H C D N N E V L K A L C N E A G
 
AT1G78700.1     W I V E P D G T T Y R K G C S R P V E R M E I G G G S A T A S P C S S Y Q P S P C A S Y N P S P G S S N F M S P A S S S
pt030017_POPTR_    W T V E P D G T T F R K G C - K P V E R M D I L G V S A T T S P C S S Y H P S P C A S Y N P S P G S S S F P S P A S S S
 
AT1G78700.1     F A N L T S G D G Q S L I P W L K H L S T T S S S S A S S S S R L P N Y L Y I P G G S I S A P V T P P L S S P T A R T P
pt030017_POPTR_    Y A A N A N M D C N S L I P W L K N L S - - S A S S S A S S S K F P - H L Y I H G G S I S A P V T P P L S S P T A R T A
 
AT1G78700.1     R M N T D W Q Q L N - - - - - - - - - N S F F V S S T P P S P T R Q I I P D S E W F S G I Q L A Q S V P A S P T F S L V
pt030017_POPTR_    R I K A D W E D Q S I R P G W G G Q H Y S F L P S S T P P S P G R Q I V P D P E W F R G I R I P Q G G P T S P T F S L V
 
AT1G78700.1     S Q N P F G F K E E A A S A A G G G G G S R M W T P G Q S G T C S P A I P P G A D Q T A D V P M S E A V A P P E F A F G
pt030017_POPTR_    A S N P F G F K E E A F G G G G S N G G S R M W T P G Q S G T C S P A I A A G S D H T A D I P M A E - - I S D E F A F R
 
AT1G78700.1     S N T N G L V K A W E G E R I H E E S G S D D L E L T L G N S S T R
pt030017_POPTR_    C N A T G L V K P W E G E R I H E E C G S D D L E L T L G N S R T R
 
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