fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G78700.1 ESGSDDLELTLGNSST at 313/325 in AT1G78700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm037328 EFGSDDLELTLGNSKT in 314/325 AT1G78700.1 1st_1st 0.708333333 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G78700.1     MTSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAG
gm037328_Glyma1 MTSGTRLPTSKERENNKRRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNEAG
                ******:** :********************:*******::*******************

AT1G78700.1     WIVEPDGTTYRKGCSRPVERMEIGGGSATASPCSSYQPSPCASYNPSPGSSNFMSPASSS
gm037328_Glyma1 WTVEPDGTTYRKGC-KPLERMDIVGGSSAASPCSSYHPSPCASYNPSPGSSSFPSPSSSP
                * ************ :*:***:* ***::*******:**************.* **:**.

AT1G78700.1     FANLTSGDGQSLIPWLKHLSTTSSSSASSSSRLPNYLYIPGGSISAPVTPPLSSPTARTP
gm037328_Glyma1 YTQIPNADGNSLIPWLKNLSTASSS--ASSPKLP-HLYLHSGSISAPVTPPLSSPTSRTP
                ::::...**:*******:***:***  :**.:** :**: .***************:***

AT1G78700.1     RMNTDW----------QQLNNSFFVSSTPPSPTRQIIPDSEWFSGIQLAQSVPASPTFSL
gm037328_Glyma1 RINVEWDEQSARPGWTRQQHYSFLPSSSPPSPGRQVV-DPEWFAGIKLPHVSPTSPTFSL
                *:*.:*          :* : **: **:**** **:: *.***:**:*.:  *:******

AT1G78700.1     VSQNPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAF
gm037328_Glyma1 VSSNPFAFKEDGLP----GSGSRMWTPAQSGTCSPAIPPGSDQNADIPMSEAVS-DEFAF
                **.***.***:. .    *.*******.************:**.**:******:  ****

AT1G78700.1     GSNTNGLVKAWEGERIHEESGSDDLELTLGNSSTR
gm037328_Glyma1 GSNTLGLVKPWEGERIHEEFGSDDLELTLGNSKTR
                **** ****.********* ************.**
BoxShade v3.31 C (beta, 970507) Output
AT1G78700.1     M T S G T R M P T W R E R E N N K R R E R R R R A I A A K I F T G L R M Y G N Y E L P K H C D N N E V L K A L C N E A G
gm037328_Glyma1    M T S G T R L P T S K E R E N N K R R E R R R R A I A A K I F A G L R M Y G N F K L P K H C D N N E V L K A L C N E A G
 
AT1G78700.1     W I V E P D G T T Y R K G C S R P V E R M E I G G G S A T A S P C S S Y Q P S P C A S Y N P S P G S S N F M S P A S S S
gm037328_Glyma1    W T V E P D G T T Y R K G C - K P L E R M D I V G G S S A A S P C S S Y H P S P C A S Y N P S P G S S S F P S P S S S P
 
AT1G78700.1     F A N L T S G D G Q S L I P W L K H L S T T S S S S A S S S S R L P N Y L Y I P G G S I S A P V T P P L S S P T A R T P
gm037328_Glyma1    Y T Q I P N A D G N S L I P W L K N L S T A S S S - - A S S P K L P - H L Y L H S G S I S A P V T P P L S S P T S R T P
 
AT1G78700.1     R M N T D W - - - - - - - - - - Q Q L N N S F F V S S T P P S P T R Q I I P D S E W F S G I Q L A Q S V P A S P T F S L
gm037328_Glyma1    R I N V E W D E Q S A R P G W T R Q Q H Y S F L P S S S P P S P G R Q V V - D P E W F A G I K L P H V S P T S P T F S L
 
AT1G78700.1     V S Q N P F G F K E E A A S A A G G G G G S R M W T P G Q S G T C S P A I P P G A D Q T A D V P M S E A V A P P E F A F
gm037328_Glyma1    V S S N P F A F K E D G L P - - - - G S G S R M W T P A Q S G T C S P A I P P G S D Q N A D I P M S E A V S - D E F A F
 
AT1G78700.1     G S N T N G L V K A W E G E R I H E E S G S D D L E L T L G N S S T R
gm037328_Glyma1    G S N T L G L V K P W E G E R I H E E F G S D D L E L T L G N S K T R
 
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