fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G01200.2 GGGVIDLGLSLRTIQH at 30/143 in AT2G01200.1
QGAYATLALQLNDMFD at 123/143 in AT2G01200.1
GGGVIDLGLSLRTIQH at 30/191 in AT2G01200.2
QGAYATLALQLNDMFG at 123/191 in AT2G01200.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029002 DDGIIDLGLSLGTVQH in 30/191 AT2G01200.2 not_1st 0.452926208 II
HGGYSSLALQLEDMFG in 119/191
Pt034740 DDGIIDLGLSLRTLKP in 30/160 AT1G15050.1 1st_not 0.417302798 II
HGGYSSLALQLEDMFG in 88/160
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G01200.2     MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELI
pt034740_POPTR_ MDSNA-SGFLLNPPALHSTYYQPREDDGIIDLGLSLRTLKPEAYHP--------------
gm029002_Glyma1 MESNT-SSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSANLYDED----LM
                *:.*: :.*: ... :*: : * ::..*:******* *:: *:* .              

AT2G01200.2     DWSQPSYN--SITQLKSEDTGHQRL---AQGYYNNEGESRGKYAYVKVNLDGLVVGRKVC
pt034740_POPTR_ ------------------SGHRMPL---AEGVQSKD-----RWAYVKVNMDGVIVGRKIC
gm029002_Glyma1 DWPHSNLNLKNSSTMHSRSAHHQNFDEEIEGVQSNE-----RWAYVKVNMDGVTIGRKIC
                                  .  :  :    :*  .::     ::******:**: :***:*

AT2G01200.2     LVDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVES
pt034740_POPTR_ MLDHGGYSSLALQLEDMFGRQSASGLRLFQAGSEFCLFYKDREENWRTVGDVPWKEFVES
gm029002_Glyma1 VLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIEC
                ::*:*.*::*****:**** ::.*******: **:.*.*:**:  ** *********:*.

AT2G01200.2     VDRMRIARRNDALLPF-----
pt034740_POPTR_ VKRLRIARKSEPLLPYSPAFS
gm029002_Glyma1 VKRLRIARKNSGIVSCSSRYT
                *.*:****:.. ::.
BoxShade v3.31 C (beta, 970507) Output
AT2G01200.2     M D P N T P A D F F K G S S K F H T Y Y S Q T K K G G G V I D L G L S L R T I Q H E T Y L P P A R M I G L D G Y G E L I
pt034740_POPTR_    M D S N A - S G F L L N P P A L H S T Y Y Q P R E D D G I I D L G L S L R T L K P E A Y H P - - - - - - - - - - - - - -
gm029002_Glyma1    M E S N T - S S F L L N S S T L H S V F Y Q D K Q D D G I I D L G L S L G T V Q H E A Y H S S A N L Y D E D - - - - L M
 
AT2G01200.2     D W S Q P S Y N - - S I T Q L K S E D T G H Q R L - - - A Q G Y Y N N E G E S R G K Y A Y V K V N L D G L V V G R K V C
pt034740_POPTR_    - - - - - - - - - - - - - - - - - - S G H R M P L - - - A E G V Q S K D - - - - - R W A Y V K V N M D G V I V G R K I C
gm029002_Glyma1    D W P H S N L N L K N S S T M H S R S A H H Q N F D E E I E G V Q S N E - - - - - R W A Y V K V N M D G V T I G R K I C
 
AT2G01200.2     L V D Q G A Y A T L A L Q L N D M F G M Q T V S G L R L F Q T E S E F S L V Y R D R E G I W R N V G D V P W K E F V E S
pt034740_POPTR_    M L D H G G Y S S L A L Q L E D M F G R Q S A S G L R L F Q A G S E F C L F Y K D R E E N W R T V G D V P W K E F V E S
gm029002_Glyma1    V L D H G G Y S S L A L Q L E D M F G S H S V S G L R L F Q S G S E Y S L F Y K D R Q D N W R P V G D V P W K E F I E C
 
AT2G01200.2     V D R M R I A R R N D A L L P F - - - - -
pt034740_POPTR_    V K R L R I A R K S E P L L P Y S P A F S
gm029002_Glyma1    V K R L R I A R K N S G I V S C S S R Y T
 
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