fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G01200.2 GGGVIDLGLSLRTIQH at 30/143 in AT2G01200.1
QGAYATLALQLNDMFD at 123/143 in AT2G01200.1
GGGVIDLGLSLRTIQH at 30/191 in AT2G01200.2
QGAYATLALQLNDMFG at 123/191 in AT2G01200.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt034740 DDGIIDLGLSLRTLKP in 30/160 AT1G15050.1 1st_not 0.417302798 II
HGGYSSLALQLEDMFG in 88/160
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G01200.2     MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELI
pt034740_POPTR_ MDSNA-SGFLLNPPALHSTYYQPREDDGIIDLGLSLRTLKPEAYHP--------------
                **.*: :.*: ... :*: * *.::..*:*********:: *:* *              

AT2G01200.2     DWSQPSYNSITQLKSEDTGHQR-LAQGYYNNEGESRGKYAYVKVNLDGLVVGRKVCLVDQ
pt034740_POPTR_ -----------------SGHRMPLAEGV-----QSKDRWAYVKVNMDGVIVGRKICMLDH
                                 :**:  **:*      :*:.::******:**::****:*::*:

AT2G01200.2     GAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESVDRM
pt034740_POPTR_ GGYSSLALQLEDMFGRQSASGLRLFQAGSEFCLFYKDREENWRTVGDVPWKEFVESVKRL
                *.*::*****:**** *:.*******: ***.*.*:***  **.*************.*:

AT2G01200.2     RIARRNDALLPF-----
pt034740_POPTR_ RIARKSEPLLPYSPAFS
                ****:.:.***:
BoxShade v3.31 C (beta, 970507) Output
AT2G01200.2     M D P N T P A D F F K G S S K F H T Y Y S Q T K K G G G V I D L G L S L R T I Q H E T Y L P P A R M I G L D G Y G E L I
pt034740_POPTR_    M D S N A - S G F L L N P P A L H S T Y Y Q P R E D D G I I D L G L S L R T L K P E A Y H P - - - - - - - - - - - - - -
 
AT2G01200.2     D W S Q P S Y N S I T Q L K S E D T G H Q R - L A Q G Y Y N N E G E S R G K Y A Y V K V N L D G L V V G R K V C L V D Q
pt034740_POPTR_    - - - - - - - - - - - - - - - - - S G H R M P L A E G V - - - - - Q S K D R W A Y V K V N M D G V I V G R K I C M L D H
 
AT2G01200.2     G A Y A T L A L Q L N D M F G M Q T V S G L R L F Q T E S E F S L V Y R D R E G I W R N V G D V P W K E F V E S V D R M
pt034740_POPTR_    G G Y S S L A L Q L E D M F G R Q S A S G L R L F Q A G S E F C L F Y K D R E E N W R T V G D V P W K E F V E S V K R L
 
AT2G01200.2     R I A R R N D A L L P F - - - - -
pt034740_POPTR_    R I A R K S E P L L P Y S P A F S
 
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