fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G01200.2 GGGVIDLGLSLRTIQH at 30/143 in AT2G01200.1
QGAYATLALQLNDMFD at 123/143 in AT2G01200.1
GGGVIDLGLSLRTIQH at 30/191 in AT2G01200.2
QGAYATLALQLNDMFG at 123/191 in AT2G01200.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054444 DDGIIDLGLSLGTVRH in 30/190 AT2G01200.2 1st_1st 0.455470737 Ia
HGGYSSLALQLEDMFG in 118/190
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G01200.2     MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELI
gm054444_Glyma2 MESNT-SRFLLNSSTLHSVFYQEKQDDGIIDLGLSLGTVRHEAYHSSANLYD----EELM
                *:.** : *: .**.:*: : * *:..*:******* *::**:* ..*.: .     **:

AT2G01200.2     DWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGE---SRGKYAYVKVNLDGLVVGRKVCLV
gm054444_Glyma2 DWPHSNLN----LKNSRTMHSRSVHQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVL
                **.:.. *    **.. * *.* .:  :::* *   *. ::******:**:.:***:*::

AT2G01200.2     DQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESVD
gm054444_Glyma2 DHGGYSSLALQLEDMFGSQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVK
                *:*.*::*****:**** *:********: **:**.*:**:. ** *********:*.*.

AT2G01200.2     RMRIARRNDALLPF-----
gm054444_Glyma2 RLRIARKNSGIVSYSSRCT
                *:****:*..::.:
BoxShade v3.31 C (beta, 970507) Output
AT2G01200.2     M D P N T P A D F F K G S S K F H T Y Y S Q T K K G G G V I D L G L S L R T I Q H E T Y L P P A R M I G L D G Y G E L I
gm054444_Glyma2    M E S N T - S R F L L N S S T L H S V F Y Q E K Q D D G I I D L G L S L G T V R H E A Y H S S A N L Y D - - - - E E L M
 
AT2G01200.2     D W S Q P S Y N S I T Q L K S E D T G H Q R L A Q G Y Y N N E G E - - - S R G K Y A Y V K V N L D G L V V G R K V C L V
gm054444_Glyma2    D W P H S N L N - - - - L K N S R T M H S R S V H Q N F D E E I E G V Q S N E R W A Y V K V N M D G V T I G R K I C V L
 
AT2G01200.2     D Q G A Y A T L A L Q L N D M F G M Q T V S G L R L F Q T E S E F S L V Y R D R E G I W R N V G D V P W K E F V E S V D
gm054444_Glyma2    D H G G Y S S L A L Q L E D M F G S Q S V S G L R L F Q S G S E Y S L F Y K D R Q D N W R P V G D V P W K E F I E C V K
 
AT2G01200.2     R M R I A R R N D A L L P F - - - - -
gm054444_Glyma2    R L R I A R K N S G I V S Y S S R C T
 
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